XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGGA
CTCAGAAACTAAGGTATTCTATGTATACTGATCTTATCTGGAGATGATAA
AGCAGAGAACATAAGATAATGAAAAGCAATGATGAAATTTGGGGTGCATG
ATAGATCAGCTCTATTATGGTAATGATTTTTGTGCGTGTGTGCATGTGTA
CATGCATATGTCAAATGAGAGCAAATTTTCACTTTCCATATATTCTGTTG
ATAACTCTTCTAATACCTAGTTTTCACTCATCACTATTCTACAGCTTATG
TATACCCACAATAAGGACCTTCTCTGAGACCAGCATACGGAATGATATTG
GGGATACCCAGAGCTCATATATTCAAGCATGCCTCTTATTAGCTGCACAA
CAATACAAAGCCACCTCACTGCTCTCATGCCTTTATCATCCATCCCCTTT
GTAAAATTGATTTAATAAAATATTAACCATATATATGTGTGTATATATAT
GTGATATATATGTGTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNTNNT
NNNNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTNTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTCTTTTNTTTTTCTTTTTTTTTTTTTTN

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAGTGCAGCAGGCACGCCAGGCC
CATAAGTCATTATTCTTTCCCACTCTCCCTACCTTCAACTTCCCTCCAGC
TCTTACATTCTTTCTGTCCCTTCTTCTGTAATATTCAATGAGCCTTGGAG
GGATAGTATAGACGTTCCATTTTTGGCTGAGCATTCAACAATTATTAGAA
GCCCTATGCTCACTTACGCATCTCTGCAGTTACCACCGACTACTAAAGAA
AAAATAGTCTCTGACCAAAGATGACAGCATCACCAATATAAATAATAAAC
AAAACTATTTAGAAGATAACTTGGCTGACACACCATGTTCATTTAGCAAA
ATAAATAAATAAATAAATAAATAAATAAATAAACAAATAAACAAATAAAC
AAATAAATAACAGCAGTAGTTTTCCCATGGTAGCCTGTGATCTCCTCAGC
CATGGTATTATTCTGAATGTCTTCTTGCGCAGCAGACCTCAATACAATCA
GAAAGCAGTTGATTACCCCAGAGCATCTATGTCACTACCGCACCTTAAGG
AACATCTTGCCTAGCCAGATGGTAGTGTTTCCTGATGGGTTTACCGCTGG
GTTACACTGGTGAAGACATTTTTTTTTTCCGAAAAAAAAAGACCTTTTAA
CCCCCCCCTGG

Query= MSMg01no429_o16.b1 MSMg01no429_o16.b1 CHROMAT_FILE:
MSMg01no429_o16.b1 PHD_FILE: MSMg01no429_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:32 2005
         (492 letters)



>mm_chr4_49172976_49173867
          Length = 892

 Score =  837 bits (433), Expect = 0.0
 Identities = 477/497 (95%), Gaps = 10/497 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggactcagaaactaaggtattctatgtatactgatcttatctggagatgata 64
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggacacagaaactaaggtattctgtgtatactgatcttatctggagatgata 264

                                                                       
Query: 65  aagcagagaacataagataatgaaaagcaatgatgaaatttggggtgcatgatagatcag 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 aagcagagaacataagataatgaaaagcaatgatgaaatttggggtgcatgatagatctg 324

                                                                       
Query: 125 ctctattatggtaatgatttttgtgcgtgtgtgcatgtgtacatgcatatgtcaaatgag 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctattatggtaatgatttctgtgcgtgtgtgcatgtgtacatgcatatgtcaaatgag 384

                                                                       
Query: 185 agcaaattttcactttccatatattctgttgataactcttctaatacctagttttcactc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcaaattttcactttccatatattctgttgataactcttctaatacctagttttcactc 444

                                                                       
Query: 245 atcactattctacagcttatgtatacccacaataaggaccttctctgagaccagcatacg 304
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 445 atcactattctacagcttatgtatacccacaataaggaacttctctgagaccagcatatg 504

                                                                       
Query: 305 gaatgatattggggatacccagagctcatatattcaagcatgcctcttattagctgcaca 364
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||
Sbjct: 505 gaatgatattggggatacccagagctcatatattcaagcattcctcttattagctgtgca 564

                                                                       
Query: 365 acaatacaaagccacctcactgctctcatgcctttatcatccatcccctttgtaaaattg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaatacaaagccacctcactgctctcatgcctttatcatccatcccctttgtaaaattg 624

                                                                       
Query: 425 atttaataaaatattaaccatatatatgt----gtgtatatatatgtgatatatat---- 476
           ||||||||||||||||||||||||||| |    |||||||||||||||||||||||    
Sbjct: 625 atttaataaaatattaaccatatatatatatatgtgtatatatatgtgatatatatatat 684

                            
Query: 477 --gtgtgtgtgtgtgtg 491
             |||||||||||||||
Sbjct: 685 atgtgtgtgtgtgtgtg 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)