BAC Information

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BAC

Clone NameMSMg01-430D02
Chromosome4 (Build37)
Map Location 47,446,275 - 47,446,487
singlet/doubletsinglet
Overlap genenone
Upstream geneAnp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236
Downstream geneLOC666473, Alg2, Sec61b, LOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430D02.T7 (MSMg01no430_d02.b1)MSMg01-430D02.TJ (MSMg01no430_d02.g1)
ACCAG522744AG522745
length797891
length of high quality
(start - end)
---213 (79 - 291)
definitionCHROMAT_FILE: MSMg01no430_d02.b1 PHD_FILE: MSMg01no430_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:55 2005CHROMAT_FILE: MSMg01no430_d02.g1 PHD_FILE: MSMg01no430_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCCATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTTTTGCCTACAGAATGGCTGACAAGCACCTGAGAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCATATCAAAACAACCTTGAGA
TTCCACCTCATACAAGTCAGAATGACTAACATTAAAATTTCAGTTGACAG
CAGATGCTGACGAGTATGTGGATAAAGAGAAAGCCTCCTCCATTGCTGAT
GGGATTGCAAGCTGGTACAAACACTCTGGAAGTCAGTCTGGTGGATCCTC
AGACAATTGTACATATAACTACTATATAATCTCTCAATATGTCTCCCTGT
CTTATAAACTGTTAAGATATTCCTAATGGTAATAAGGACGCATGCTCCCA
TATGTCCATATTATACTTACTAATCACATCCATAACCTGTAAAGAACCCA
GATGTCCCTCTACTGACTAATGAATTTCCCAAATGTTTTCACCCCTCGTT
CCCTTTCTTTACTTCTCCTTTTTCCCTCTCTTAACTTAATCCTATGTTTT
TAACCCTTGGATAATACTTCCCCTTCCAACCTAAATTGTATTTATGCTTC
TCCTATTTTTTCTCCCTTTTTCTTTACTATTTCTCTCACTTTCTCTCCAT
TTATCTATTTCCACAAATATTATTCCCTCCTCCCTAAATTCTTCTTTTAT
TAAACCCCCAGTATCCTTTTTCCTTACTCTCCCTTTCCCTATTTTCCTAT
TTCCTTTTCTTTTTCTTTTTTTCTATTTCCTCCATCTCCTTCTTTAG
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTCAGCCACGGCTCTCAA
GGAAAATATCTGACAAATTGCCACCATTGAAACAGCTGTACCTTGAGAAT
CGATGTATTGCTATTCAGTCAATTCTGATACTACGGAAAGACACAATCAT
GCTTGTCTATGTTTCTCACATGGTGTGTTCACAGCACTTTTTAATTGATA
TTTTTCTTTTGGACTATTACTTTTCTCAGTTTCTCATGTCAGTTTTTGTT
TGATTCTGACCATGTCTCTTTCTCTATGTACTCTTGCTTTTCCCCCTTAA
TCCTTTCCCCCTTTCTTTTCGTTTCATCCTATCCTTTCTCCCTTTTATAT
TTTTCCCCTCCTTCCTTACCTTCTTTCGTCCTCCTTTCCCTCTATCCCTC
TTCCTTCTTTCCCTTCTACTTCCTTCTTTCTTCCCCTTTCCCCTATATTC
CCCAACCCTCCATCTTTACCCTTCTTATTCCTACCTATCCTCTTCCTTCC
TTTTCCTTCTTTTTTCCTCTTTCTTTCCCCTCCCTTTATCCTCGCCTACT
TCCCTCCCTTCTATCCCTCTTCTATTCCTTATACCCTCCCCTCTTTCTTT
TCTTTCTTCCCTTCTCCTCTCTTATCTTTTTCCTCCCTATTTTACTCTTA
CCCTCCTCCTTCCCTTCACTATAAATCCCTAACCGTTCCTTTCCCCTCCT
TCCCCCTCCACTCCCCCCCTTCCTTCCCTTCTTTCCTATCCCCCCCCTCC
ACTATACTCCCCCTTTTCCTTCTCCTCTACCTATATCTCCCTTTCCCTTT
CCTCCTCCCTTTCTCCCTCCATTTACCACTCTTTTCTCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_d02.g1 MSMg01no430_d02.g1 CHROMAT_FILE:
MSMg01no430_d02.g1 PHD_FILE: MSMg01no430_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:55 2005
         (213 letters)



>mm_chr4_47446075_47446687
          Length = 613

 Score =  381 bits (197), Expect = e-110
 Identities = 209/213 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctcagccacggctctcaaggaaaatatctgacaaattgccaccattgaaacagctg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tctgctcagccacggctctcaaggaaaatatctgacaaattgccgccattgaaacagctg 260

                                                                       
Query: 61  taccttgagaatcgatgtattgctattcagtcaattctgatactacggaaagacacaatc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 taccttgagaatcgatgtattgctattcagtcaattctgacactacggaaagacacaatc 320

                                                                       
Query: 121 atgcttgtctatgtttctcacatggtgtgttcacagcactttttaattgatatttttctt 180
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgcttgtctatgtttctcacgtggtgtgttcacagcactttttaattgatatttttctt 380

                                            
Query: 181 ttggactattacttttctcagtttctcatgtca 213
           |||||||||||||||||||||||||||||||||
Sbjct: 381 ttggactattacttttctcagtttctcatgtca 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)