BAC Information

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BAC

Clone NameMSMg01-430G03
Chromosome4 (Build37)
Map Location 92,701,719 - 92,878,286
singlet/doubletdoublet
Overlap geneLOC620269
Upstream geneLOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430G03.T7 (MSMg01no430_g03.b1)MSMg01-430G03.TJ (MSMg01no430_g03.g1)
ACCAG522890AG522891
length809792
length of high quality
(start - end)		270 (52 - 321)347 (84 - 430)
definitionCHROMAT_FILE: MSMg01no430_g03.b1 PHD_FILE: MSMg01no430_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:12 2005CHROMAT_FILE: MSMg01no430_g03.g1 PHD_FILE: MSMg01no430_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,701,719 - 92,701,984)(92,877,940 - 92,878,286)
sequence
AGGGCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGGTTTGCCTTATGATGCTTTTCTCTCTGTTCACCTG
GGCCACTTTCTTTCTTTTTCTTAATTAGGCTGGGTCTCTCAGTCTTGTTT
ATCACTCAAAGATCATATATTACATGCAAAGACTACTTTATGCTTTTCTT
TGATTGATTATCTTTCACTAATTTTGACATAGTTTGGTTTGTTTTTCCCA
AATCTTGAATTGTATCATTAATTCATTTAGTTGTGATTTTCCATTTTGTT
TTTTTTGTTTCCTCTTTTGTAGCTTGTTTTATACATGTTACTCTTAGTCC
TGTTTTTTATGCATTCCAGAGGTTTTTGTGTGCTGTTTCTCTGTGTGTAG
TTTATTTTCATTTATATGTTATCACCCCTTTGTTTTTTTCTGACTTTTTT
TCCCCATTTTCCCCTCTTTCTCTTTTCTTTTTTTTCGTCTCCCTTTTTTT
TTTCCCTTTCCCTTTTTCCCCCTTTCCCCTTTTTCCACTTTTCCTTATCC
TCCCCCTATTTTCTTTTTTCTCCCCTCCTTCTTTTCCCTCCTTTTGCCTT
TTCCCCCTTCTTTTCCTTGCTCTCCCCTCTTTTCCCCTTTTTTTCTTTTT
TTCTCCCCCTTTCTCCCTTTTTTTCCTCTTCTTTTTCCTTTCTCCTATCT
TTTCTCTTCTTTTTCCCCCTTATTCCCCTCTTTTACAACCCTTCCCTCTT
CTCACCTCCCTTTGTTTTTCCCCTTTCTAAATTCCCACTTACCCTCTCGT
ATCCTTACN

TTGTTGGTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTCTATCTGGAAAC
AAAGTAAAATAATCAATGTGAAGTAGCAGTTCTCAATAACTGGGTAGAAG
CCAGTTAAAGACAGTAGTCCTCACAAACTCTCTGATAGCCAAGGTAATCT
CTCTGTTGGCTTGAGTTAGATACCTTACAAGGGTAGTTAGTTTATTAAGC
AGGGAAAGAAGCCAGGCTCAGCTTGAAGGAGTCTCTGGATAGAAGAGTTG
TTGCAGGACCCTTGAAGAACATCACTGTATCATGTTGTTTAGGGAAGGAA
ACAAAACAGCAGTGCATAACATGCCTTCTCTGTACTGTGCTGTAATAATC
TAAGTCCCTGCTGGTAACTCTAGAGCTGTCATCCTGTCTAGTGTGTGGTG
CAAGGAAGTTTTTGTTTTTTCTTCCCCGTATTTTTGATCTTTCTTCCTTA
TTATTTACTTTCCTTTTTTCTCTTCTTTTTTCTTCCTCTTCCTTGTTTTT
TATTTTTTTTCCCCTCCCCTTTTCCTGTTTATACTTTCCTTATCTTCTTC
TTTTTTTTCTATTTTTATCTGCGCACCCTTTTCTTTTATCACTTTTTTCT
GACTTTCATTATTTCTATCTCTACCCGCCCACTACTTAGTTTATACTTTG
TTGCTCCTTATCCTTACCCTTAGTTATTTTTCTTCTTTATTTTAAAATAC
TTTATTATAGCTCCCGGCCCGTGAGCCTACTCGCCATTTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_g03.b1 MSMg01no430_g03.b1 CHROMAT_FILE:
MSMg01no430_g03.b1 PHD_FILE: MSMg01no430_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:12 2005
         (270 letters)



>mm_chr4_92701515_92702184
          Length = 670

 Score =  491 bits (254), Expect = e-143
 Identities = 263/266 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttggtttgccttatgatgcttttctctctgttcacctgggccactttctttct 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttggtgtgtcttatgatgcttttctctctgttcacctgggccactttctttct 264

                                                                       
Query: 65  ttttcttaattaggctgggtctctcagtcttgtttatcactcaaagatcatatattacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttcttaattaggctgggtctctcagtcttgtttatcactcaaagatcatatattacat 324

                                                                       
Query: 125 gcaaagactactttatgcttttctttgattgattatctttcactaattttgacatagttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaaagactactttatgcttttctttgattgattatctttcactaattttgacatagttt 384

                                                                       
Query: 185 ggtttgtttttcccaaatcttgaattgtatcattaattcatttagttgtgattttccatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtttgtttttcccaaatcttgaattgtatcattaattcatttagttgtgattttccatt 444

                                     
Query: 245 ttgttttttttgtttcctcttttgta 270
           ||| ||||||||||||||||||||||
Sbjct: 445 ttggtttttttgtttcctcttttgta 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no430_g03.g1 MSMg01no430_g03.g1 CHROMAT_FILE:
MSMg01no430_g03.g1 PHD_FILE: MSMg01no430_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:12 2005
         (347 letters)



>mm_chr4_92877740_92878486
          Length = 747

 Score =  640 bits (331), Expect = 0.0
 Identities = 343/347 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttctatctggaaacaaagtaaaataatcaatgtgaagtagcagttctcaataactgg 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 547 actttctatctggaaacaaagtaaaacaatcaatgtgaagtagcagttctcaataactgg 488

                                                                       
Query: 61  gtagaagccagttaaagacagtagtcctcacaaactctctgatagccaaggtaatctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gtagaagccagttaaagacagtagtcctcacaaactctctgatagccaaggtaatctctc 428

                                                                       
Query: 121 tgttggcttgagttagataccttacaagggtagttagtttattaagcagggaaagaagcc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 427 tgttggcttgagttagataccttacaagggtagttagtttactaagcagggaaagaagcc 368

                                                                       
Query: 181 aggctcagcttgaaggagtctctggatagaagagttgttgcaggacccttgaagaacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aggctcagcttgaaggagtctctggatagaagagttgttgcaggacccttgaagaacatc 308

                                                                       
Query: 241 actgtatcatgttgtttagggaaggaaacaaaacagcagtgcataacatgccttctctgt 300
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 actgtagcgtgttgtttagggaaggaaacaaaacagcagtgcataacatgccttctctgt 248

                                                          
Query: 301 actgtgctgtaataatctaagtccctgctggtaactctagagctgtc 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 actgtgctgtaataatctaagtccctgctggtaactctagagctgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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