TTTCTCCTTCCTTTTTTTGTGGTCGCTTTACGACTCACTATTTTGAGAGG
ATCCGCGGAATTCATGCTTTGCATAAATGTGGACTGGGGAGAAAATAAGC
CAATAGGAAGAGGTTTATTTTTCCTCAGTTTACCTATACCTATCTCTGAA
TAAAACTTATTTTTCTTTAACCATTTTACTATTTTTGCAATACTTATTGT
ATATATATATATATATATATATATATATATATATATTCCATGTATATAAT
CCACACAAGTACCATGACATCGAACTACACATAGTCTCTGATTTCTGCAT
TTGAATTGTTACGCTTTTAACCCCACTATTTATTCTCCTTCTTTTTTTCC
AGTCCATATAATTATTTGTCTGTGCTTCCCTCTGCCCTCTTGTTTCTTAT
ATTGTTTCCCTGTCCTCCGCTCCCTTCCTTATACCTCACCTCTCTCTCCT
TTCTCTTCTCTCTTTTCTTTCCCCTTCTTTTTTCTCCTTTCTTTCCCCTT
CTTTTTTTTTTCCTTTTTCCCTTTTTTCCTTTCTCCTTATCTTTTATCCC
TTCCTCTTTTCTCCCCTTTTTCCTTTTTTTTTTTTCTTTCCTTTTCTCTA
TTTTTCTCCTTTTTCACTTTCTCTTCTCTCGCTCTCTCCTTCCTTTTACA
TTCTCCCTTTTTTCTTTTTTTATCTCTTTTTTTTTCTTTTATTTCTCTCT
CTCTCCTTTCCATTTCACTTTCTTTTCCTACTCTCTTTTCCCTTTCTCTC
TTTCTTTCCACTTATTTACTTTTCTCTATCTATTCCTTTT

NNTTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCACTCTTAAGACA
GGTGTACACTCCAGAATTCTGTTCACTTTCTACATGACGGAGTTTTCACT
TATTTTTGCCAGAGGAATTTCATACGTGTATATAAAAATTCAGTATAAAA
ATCGTACTCATACTGCTAACCCAAGAAATTTAAGGTAGTAGCTATAAATG
TGTCTTTTAAATATACAGAGATGTTATAGTGTGCTATTCTATACAGTTAT
CATAGATAGAACTGATGAACAGAAAGTGAAAATGTAGCACATGTGGCATT
TATTCTGTCTCTGGGATCAAGATAGTGTCATATGAGGGAACATGGACAGA
GCTGGAGGTCACCATGTGAAGAAAATTAAGGTACAGACACAGATGAGCCA
GCATAGTTTCTCTATGTTGTGTTTCAAGGGTACCCGCGAAACCATCCACG
CCTCGTACCTTATTTTCCATTCTCCCCCTTTTTCTTCCAATTCCCCACTC
TCCCTTTATCCTTACCCCCCTTTCCACCTTCTTCCTCCCCTCTCTTCTTA
TCACCTTTCTCTTTTCCTCCTAGCCTCTCCTTTTCTCCCTTACATCTTTC
TTTCGTCCCCCCTCTCCCCCTTTCTTCTACTTTCAATCTCCCCCTCCTCT
TATCCCCCCTTCTTCTAACCTCCAACATTTTCCATCCTTCACGAACCTCT
TCCCATTCCTCCTACCCATTATCCTCCTCCTACCTCTTT

Query= MSMg01no430_j02.b1 MSMg01no430_j02.b1 CHROMAT_FILE:
MSMg01no430_j02.b1 PHD_FILE: MSMg01no430_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:28 2005
         (189 letters)



>mm_chr4_91743345_91743933
          Length = 589

 Score =  282 bits (146), Expect = 7e-81
 Identities = 152/154 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcatgctttgcataaatgtggactggggagaaaataagccaataggaagaggttt 65
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggaatttatgctttgcataaatgtggactggggagaaaataagccaataggaagaggttt 289

                                                                       
Query: 66  atttttcctcagtttacctatacctatctctgaataaaacttatttttctttaaccattt 125
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctttttcctcagtttacctatacctatctctgaataaaacttatttttctttaaccattt 229

                                             
Query: 126 tactatttttgcaatacttattgtatatatatat 159
           ||||||||||||||||||||||||||||||||||
Sbjct: 228 tactatttttgcaatacttattgtatatatatat 195


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no430_j02.g1 MSMg01no430_j02.g1 CHROMAT_FILE:
MSMg01no430_j02.g1 PHD_FILE: MSMg01no430_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:28 2005
         (327 letters)



>mm_chr4_91583643_91584369
          Length = 727

 Score =  578 bits (299), Expect = e-169
 Identities = 314/319 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   cttaagacaggtgtacactccagaattctgttcactttctacatgacggagttttcactt 68
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 209 cttaagacaggtgtatactccagaattctgttcactttctacatgagggagttttcactt 268

                                                                       
Query: 69  atttttgccagaggaatttcatacgtgtatataaaaattcagtataaaaatcgtactcat 128
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 269 atttttgccagaggaatttcatacatgtatataaaaattcagtataaaaatcgtactcat 328

                                                                       
Query: 129 actgctaacccaagaaatttaaggtagtagctataaatgtgtcttttaaatatacagaga 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 actgctaacccaagaaatttaaggtagtagctataaatgtgtcttttaaatatacagaga 388

                                                                       
Query: 189 tgttatagtgtgctattctatacagttatcatagatagaactgatgaacagaaagtgaaa 248
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 389 tgttatagtgtgctattctatacatttatcatagataaaactgatgaacagaaagtgaaa 448

                                                                       
Query: 249 atgtagcacatgtggcatttattctgtctctgggatcaagatagtgtcatatgagggaac 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atgtagcacatgtggcatttattctgtctctgggatcaagatagtgtcatatgagggaac 508

                              
Query: 309 atggacagagctggaggtc 327
           |||||||||||||||||||
Sbjct: 509 atggacagagctggaggtc 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)