NATGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCG
CGGAATTCTTTCCATTCCGCAAATTTAACCAATGTGGTTTAGCAAAATTG
CCCTATGTTCTGACAATTTATACTGTAAATCTAAAGTATAGATTATGGCC
ATGATTCATTTAATTCACATGCTGCAAATATATTTGAAAAAAGCCTGTCT
AAGATGGAGAGAATGAACAGACACTCATGGCGAGGTTTTCTTACAAGATA
GCACATCATTTTGCAAAGGAAGATGGAAAAAAGGATTTCATTGCATAAAC
AACAATAATTTCACACTAGTAGCTGTTTCAGGAAGCTGGTGCACACTTTA
GCAAAACAGATTCACCCCAGCAATGTCTTAGTTGATGGAATTGTGGGAAA
AAATCACCCATGGAAGCATCTCCATTAATCTCTCATCAGTTTTATAAGAT
GTTGATATATATGTATCCAAATATTTTCCTTAATATTTGATTCATTTTCC
GTTTGTATTATTTTTCCTTTGTCTCCTTTTTTCCTTTTCCATTTTCTATA
CCTTATTATATTAACCTCTCTGTTCCCATAATTTTTTACTCCCCATTCCA
TCTATTTCTCCCTTTTTTCTCTACTCCTTTTATTCATTTTCTCTTTCTTA
ACATTCTACCAATTTTCTTATTTCTTCTTCTTTCTTACTTTCCATCATTA
CACTCCATATTCCTTTTCCCCTACTCTTTCTTACTCTTTCTCTTTCTTCC
TCTTACATTCTCTTTTTCTCCCCATACCTCTCACTCTCCTCTTTTC

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTAACAAAGAAACTAA
CAAACTGCAAAACCACCACAGATATTTAGTAGTGACCGAAAAATAATCCC
AGCTCAGTTCTTAATTGAGTAAAAAAGTCTATTGGCATAATGTGCTCAGA
AGTCAAATAAATGCATTTGAAGGAAAATAACATCACTAAGATTAAATTTC
CAATTCTTCCATGCAGAGATTTATTAAAGATATCAAGTCTACTAAAAATA
TGATGAGGTCAAATTTAAAATATAAATGCTTTCTACACTTGAGTTGAACC
CTTGGCATTGTTATTTAAAGTTTAGATTATATTGTGACTAACAAGTAGAT
TAAAAAGATCAGATGAGAATGCTAGAAAGCTGAAAATGTACAGTATCTCG
AAAAAAATACTGCCCACAACTACTAAGGGGAAAATAATATTTGACCCCTA
GCAACTATCTCTGACTAAATTTAAAACACAACTCCCCGTTTTTCTGCCTT
TTATTTTATACACCCCCCAGAATTATTTCAGTGTCCTATATTACATCCGC
CGGCCTCTCCGTAACCCCTTTTTAGTTAACTGGCGCGAGCCCCTTTTTTC
TCCCTGTCGAACCTTCACTTCCGTCCCCCCCTCTTCTCGTTATGAATCAT
CTACCTTACCCCCCCCTTCTACAAATATCCCCCTCTTTTATACCCGCTTT
CTATTATCTTCCCTATCCCATTCCTCCTCCCATCCCTACGTACCCATTAT
ACCCCTTCCTTCTCTTTTN

Query= MSMg01no430_j18.b1 MSMg01no430_j18.b1 CHROMAT_FILE:
MSMg01no430_j18.b1 PHD_FILE: MSMg01no430_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:32 2005
         (249 letters)



>mm_chr4_27562923_27563571
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaccaatgtggtttagcaaaattgccctatgttctgacaatttatactgtaaatctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaccaatgtggtttagcaaaattgccctatgttctgacaatttatactgtaaatctaaa 260

                                                                       
Query: 61  gtatagattatggccatgattcatttaattcacatgctgcaaatatatttgaaaaaagcc 120
           | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ggaaagattatggccatgattcatttaattcacatgctgcaaatatatttgaaaaaggcc 320

                                                                       
Query: 121 tgtctaagatggagagaatgaacagacactcatggcgaggttttcttacaagatagcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctaagatggagagaatgaacagacactcatggcgaggttttcttacaagatagcaca 380

                                                                       
Query: 181 tcattttgcaaaggaagatggaaaaaaggatttcattgcataaacaacaataatttcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattttgcaaaggaagatggaaaaaaggatttcattgcataaacaacaataatttcaca 440

                    
Query: 241 ctagtagct 249
           |||||||||
Sbjct: 441 ctagtagct 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no430_j18.g1 MSMg01no430_j18.g1 CHROMAT_FILE:
MSMg01no430_j18.g1 PHD_FILE: MSMg01no430_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:32 2005
         (353 letters)



>mm_chr4_27705498_27706250
          Length = 753

 Score =  636 bits (329), Expect = 0.0
 Identities = 347/353 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttaacaaagaaactaacaaactgcaaaaccaccacagatatttagtagtgaccgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 catttaacaaagaaactaacaaactgcaaaaccaccacagatatttagtagtgaccgaaa 494

                                                                       
Query: 61  aataatcccagctcagttcttaattgagtaaaaaagtctattggcataatgtgctcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aataatcccagctcagttcttaattgagtaaaaaagtctattggcataatgtgctcagaa 434

                                                                       
Query: 121 gtcaaataaatgcatttgaaggaaaataacatcactaagattaaatttccaattcttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtcaaataaatgcatttgaaggaaaataacatcactaagattaaatttccaattcttcca 374

                                                                       
Query: 181 tgcagagatttattaaagatatcaagtctactaaaaatatgatgaggtcaaatttaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgcagagatttattaaagatatcaagtctactaaaaatatgatgaggtcaaatttaaaat 314

                                                                       
Query: 241 ataaatgctttctacacttgagttgaacccttggcattgttatttaaagtttagattata 300
           ||||||||   | |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 313 ataaatgcaaacaacacttgagttgaacccttggcattgttatttaaagtttatatgata 254

                                                                
Query: 301 ttgtgactaacaagtagattaaaaagatcagatgagaatgctagaaagctgaa 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttgtgactaacaagtagattaaaaagatcagatgagaatgctagaaagctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)