BAC Information

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BAC

Clone NameMSMg01-430L04
Chromosome4 (Build37)
Map Location 25,217,722 - 25,402,047
singlet/doubletdoublet
Overlap genePrdx6-rs2, LOC665019
Upstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik
Downstream geneLOC625732, Fut9, LOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430L04.T7 (MSMg01no430_l04.b1)MSMg01-430L04.TJ (MSMg01no430_l04.g1)
ACCAG523130AG523131
length842824
length of high quality
(start - end)		250 (45 - 294)284 (78 - 361)
definitionCHROMAT_FILE: MSMg01no430_l04.b1 PHD_FILE: MSMg01no430_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:40 2005CHROMAT_FILE: MSMg01no430_l04.g1 PHD_FILE: MSMg01no430_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,217,722 - 25,217,965)(25,401,764 - 25,402,047)
sequence
NTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCG
GAATTCAATTGCATGGGTCCATCCAGTCCTGGGCTTTTCTTTAAGAGGAG
ACTTGGTTACAATTCTATCACATTGCTCGTAATGGGTCTTCTTACTAGTT
ATGTATCCTGGTTTTAATATGCATTTAGGAATTTTATTTATTTTGGGTTA
TTCAGGTTTTTAGAGCATAAGTTTCATTGTAATACATAGAAACATCCTAT
ATTTCATTGGAATATGTTGTAATACACACACCCTTTTGTGTGTGTATGTA
TGTATGTTCTGTATTGTCATTTTTTTTATCATTTATCTTATCTCATCTGT
TACCCAGTCCTCTTTTACCTATTTCGATTCTGTAGCTGGTTGCGGTCTGT
TTTTGTGTTTGTTTCTTTCTTCGCCCCCTTCTATTTCCGCTTTCATTTTC
TTCTTTTCTCTCTTTTTTTTCCTCTATTTTCGTGCCCTCTTTTTTTATCC
CCCCTTCTTTTCCCCTGTTTTTTCTTTTCTTCTTTTCTTCGCCTCTCTTC
TATCTTTACTTCTTTTTTTTTTTTTCTTTTTTTTTCTTTTGACTCTCACT
CTTCTCACTTTTTTTTTCATTAACATGCCTATTTCTTATTTCTTTCTCCT
CTTTTTCTTCTTCCTCTTCATTTAGTCTTTCTTTTGTCTTTAGCGGTGTT
GCGTGTGATTCGGGTGTTCCTTCTCGTTTACTTTCTTTCTCTTTTTGCTT
CCCCTTACTCCCTTTCCCTCTTCTCTCCCTTCTTCATTTTTTCTTTTCTT
TTCCTTCTTCTTTTATTCCGTATTCCTTTCCTCCACTTTTTG

NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGAGTATGCTCTATCCTAG
TGAAGGAACTGACTTAGTTTTGAGGGCAAGGGCAGGCAGGCAACAAAGAG
CAAGTTTCCTTCTTCTATGTTCTTTATCTAGAATTCCAGCAGAAGGTGTG
GCCCAGATGAGAGGGGTGTCTTCCTACCTCAAAGATCTGAATTAGAAGTG
GATCTTCCTTGTTTTGGTTCACTTTGAAACTGGTTCTTGTTGCAAAGCCC
ATACTAGCCTCATATTTGTGGCAATCGCTCTGCTTCAGCTTTCCAAGTGA
TGATCTTACAGGAGTGAGCCACCATGCATGGCCTCGGTGCTATAATTATC
CCTGCGTTGTACTATCTACATCTATCGGCTCCAGATCTACGTTTTCCCCT
CCCTGCGTCCTTCATCACTTTCCCTTTTTTCCCTATTCACCTCTTTCCCC
CCTTTTTCCTTCGCGTCTTCTTGACTTCTTATCCCCTTCTAACCCTCCTA
TCTTCGCTTTTTCCCCCTCACTCCCCTTTTATTCTTTCCTCCCCTCCACC
TCCTTTTTCCCTCCCCTCCCAATCTTTTCCCCTCTTTTCCTATACCCTCT
TCCCCCCCCCCCTTCTACCCCATTCTCTCTTTCCTTTTCTTCCCTTCTTC
TCCCCCTCTCCAACCTTTCTTCTTACCCCCCTTCCCGCATATCCCTCCAC
ATCCAACCCTCTTCTTTTTCCTCCTTTCCCAACTCCCCCCATTCCTCCAC
CCTTTACCGCCCCCCCCCCTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_l04.b1 MSMg01no430_l04.b1 CHROMAT_FILE:
MSMg01no430_l04.b1 PHD_FILE: MSMg01no430_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:40 2005
         (250 letters)



>mm_chr4_25217516_25218165
          Length = 650

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaattgcatgggtccatccagtcctgggcttttctttaagaggagacttggttac 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaattgcatgggtccatccagtcctgggcttttctttaagaggagacttggttac 266

                                                                       
Query: 67  aattctatcacattgctcgtaatgggtcttcttactagttatgtatcctggttttaatat 126
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 267 aattctatcacattgctcgtaatgggtctgcttactagttatgtatcctggttttaatat 326

                                                                       
Query: 127 gcatttaggaattttatttattttgggttattcaggtttttagagcataagtttcattgt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gcatttaggaattttatttattttgggttattcaggtttttagagcataagtttcattgt 386

                                                                       
Query: 187 aatacatagaaacatcctatatttcattggaatatgttgtaatacacacacccttttgtg 246
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 387 aatacatagaaacatcctatatttcattggaatatgttgtaatacatacacccttttgtg 446

               
Query: 247 tgtg 250
           ||||
Sbjct: 447 tgtg 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no430_l04.g1 MSMg01no430_l04.g1 CHROMAT_FILE:
MSMg01no430_l04.g1 PHD_FILE: MSMg01no430_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:40 2005
         (284 letters)



>mm_chr4_25401404_25402087
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaggagtatgctctatcctagtgaaggaactgacttagttttgagggcaagggcaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 caaaggagtatgctctatcctagtgaaggaactgacttagttttgagggcaagggcaggc 585

                                                                       
Query: 61  aggcaacaaagagcaagtttccttcttctatgttctttatctagaattccagcagaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aggcaacaaagagcaagtttccttcttctatgttctttatctagaattccagcagaaggt 525

                                                                       
Query: 121 gtggcccagatgagaggggtgtcttcctacctcaaagatctgaattagaagtggatcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtggcccagatgagaggggtgtcttcctacctcaaagatctgaattagaagtggatcttc 465

                                                                       
Query: 181 cttgttttggttcactttgaaactggttcttgttgcaaagcccatactagcctcatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cttgttttggttcactttgaaactggttcttgttgcaaagcccatactagcctcatattt 405

                                                       
Query: 241 gtggcaatcgctctgcttcagctttccaagtgatgatcttacag 284
           |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 404 gtggcaatcgttctgcttcagctttccaagtgatgatcttacag 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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