Query= MSMg01no431_a13.b1 MSMg01no431_a13.b1 CHROMAT_FILE:
MSMg01no431_a13.b1 PHD_FILE: MSMg01no431_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:10 2005
(619 letters)
>mm_chr4_78450684_78451703
Length = 1020
Score = 1166 bits (603), Expect = 0.0
Identities = 616/621 (99%), Gaps = 3/621 (0%)
Strand = Plus / Plus
Query: 1 taattacgtgaataatacaataaaaa--aaaccatatatcatgtataaagaacacatttt 58
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 201 taattacgtgaataatacaataaaaagaaaaccatatatcatgtataaagaacac-tttt 259
Query: 59 tttaaatttttcactctgttttttaagtttcttttttaaattaggtatttatttcatgaa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttaaatttttcactctgttttttaagtttcttttttaaattaggtatttatttcatgaa 319
Query: 119 ataaatacctaataaaaaagaaattaaaaaaagcacattttaatataaattgaatcctag 178
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 ataaatacctaataaaaaagaaattaaaaaaaacacattttaatataaattgaatcctag 379
Query: 179 taagaagttagcccatgatagacttagaattttgaaaaatgttttaaatttgttcttcta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taagaagttagcccatgatagacttagaattttgaaaaatgttttaaatttgttcttcta 439
Query: 239 ttcaagctcttttgaatcataatcaatttaattacagatattgataaaaatttaggcagc 298
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcaagctcttttgactcataatcaatttaattacagatattgataaaaatttaggcagc 499
Query: 299 cgaacttcagttgaattaatagtattttagtaataaatggagcttttcactaatttaaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cgaacttcagttgaattaatagtattttagtaataaatggagcttttcactaatttaaag 559
Query: 359 taattttgtatttaatagcctcatattttctgactgaaaaatttcaaaatcctcaaagtt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taattttgtatttaatagcctcatattttctgactgaaaaatttcaaaatcctcaaagtt 619
Query: 419 tgtagataattttgacaacagtacatgtttgcctatcaaaattttataatgctgtatata 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtagataattttgacaacagtacatgtttgcctatcaaaattttataatgctgtatata 679
Query: 479 atgactgtatttttcttcagaaatgatattaattcaaagttatgttcctcatccaaagga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgactgtatttttcttcagaaatgatattaattcaaagttatgttcctcatccaaagga 739
Query: 539 acatataaaatatttgtatttggtttgttcaggagtaattattgcttagtaggaacttac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acatataaaatatttgtatttggtttgttcaggagtaattattgcttagtaggaacttac 799
Query: 599 atttaatctatgcctattatt 619
|||||||||||||||||||||
Sbjct: 800 atttaatctatgcctattatt 820
Score = 108 bits (56), Expect = 9e-28
Identities = 70/76 (92%), Gaps = 6/76 (7%)
Strand = Plus / Minus
Query: 77 ttttttaagtttcttttttaaattaggtatttatttcatgaaataaatacctaat--aaa 134
|||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 350 ttttttaa-tttctttttt--attaggtatttatttcatgaaataaatacctaatttaaa 294
Query: 135 aaagaaa-ttaaaaaa 149
||||||| ||||||||
Sbjct: 293 aaagaaacttaaaaaa 278
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space: 615090
Effective search space used: 615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_a13.g1 MSMg01no431_a13.g1 CHROMAT_FILE:
MSMg01no431_a13.g1 PHD_FILE: MSMg01no431_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:11 2005
(509 letters)
>mm_chr4_78595337_78596245
Length = 909
Score = 839 bits (434), Expect = 0.0
Identities = 499/531 (93%), Gaps = 22/531 (4%)
Strand = Plus / Minus
Query: 1 tgtgtgcctcctataaatatttatttatgtctttccttaggttggagaagtatattttta 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 687 tgtgtgcctcctataaatatttatttatgtctttccttagattggagaagtatattttta 628
Query: 61 tatattcttgttaaaaattatagcttaagccattgaccaggactcttctctcttatttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tatattcttgttaaaaattatagcttaagccattgaccaggactcttctctcttatttat 568
Query: 121 acctataattcaggatttggtctttttgatttggtggatggaaggtatgtgggaatagga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 567 acctataattcaggatttggtctttttgatttggtggatggaaggtatgtgggactagga 508
Query: 181 aagcaatgaagagatctattaaagttatattatgaataagaaggttttggactttggcct 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 507 aagcaatgaagagatctattaaagttatatcatgaataagaaggttttggactttggcct 448
Query: 241 tataataatattttgggttttcagatgggtgaggaaaaaaatgatatcatagcaaaaggg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tataataagattttgggttttcagatgggtgaggaaaaaaatgatatcatagcaaaaggg 388
Query: 301 aagaaatggcttacccagaagaggtgacttttttgttgttattgttctttttgttttttg 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 387 aagaaatggcttacccagaagaggtgacttttttattgttattgttctttttgttttttc 328
Query: 361 ttttt-tt-ttgttgtt-ttgtt-ttgtttt--gtttt-gtttt---------------g 398
||||| || |||||||| ||||| ||||||| ||||| ||||| |
Sbjct: 327 tttttgttgttgttgttgttgttgttgttttttgtttttgtttttgtttttgtttttttg 268
Query: 399 agacatggtttctctttatagncctggatgtcctgcaactcactttgtagaccaggctgg 458
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agacatggtttctctttatagccctggatgtcctgcaactcactttgtagaccaggctgg 208
Query: 459 cctggaactcaaaaatctgcctgcctctgtctccctagtgctgggattaaa 509
||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 207 cctggaactcaaaaatccgcctgcctctgcctcccaagtgctgggattaaa 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
