Query= MSMg01no431_b17.b1 MSMg01no431_b17.b1 CHROMAT_FILE:
MSMg01no431_b17.b1 PHD_FILE: MSMg01no431_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:16 2005
(550 letters)
>mm_chr4_85592863_85593812
Length = 950
Score = 644 bits (333), Expect = 0.0
Identities = 342/345 (99%)
Strand = Plus / Minus
Query: 5 gaattctagtcttctttgccctgggtgtaggctgcaggtatttggcaagggtatatcttt 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gaattctagtctcctttgccctgggtgtaggctgcaggtatttggcaagggtatatcttt 286
Query: 65 ggatcacagtaatcagctgcagcaggatttcttcctatgtgctaacttggaatcatctct 124
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 285 ggatcacagtaatcagctgcagcaggatttcttcctatgtgctaacttggaagcatctct 226
Query: 125 atgacacaaaaacttactggttttgtttgtttgtttgtttgttgtctgttttgttttgtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 atgacacaaaaacttactggttttgtttgtttgtttgtttgttgtctgttttgttttgtt 166
Query: 185 ttgtttacaatccagctgttgcctcccagtacccctcccagagttcctcattccattcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ttgtttacaatccagctgttgcctcccagtacccctcccagagttcctcattccattcct 106
Query: 245 cctccccctgtctccaagaggatgcctcccctaccagacctcccttctccatagggcatc 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 105 cctccccctgtctccaagaggatgcctcccctaccagacctcccttctccatggggcatc 46
Query: 305 aagtctcttgaagattaaacacattttctcttactgaggccagac 349
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 aagtctcttgaagattaaacacattttctcttactgaggccagac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_b17.g1 MSMg01no431_b17.g1 CHROMAT_FILE:
MSMg01no431_b17.g1 PHD_FILE: MSMg01no431_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:16 2005
(300 letters)
>mm_chr4_85401970_85402669
Length = 700
Score = 284 bits (147), Expect = 3e-81
Identities = 190/213 (89%), Gaps = 18/213 (8%)
Strand = Plus / Plus
Query: 1 tctgggagctgcaccatgtgcctcttgatgggaatgggatatagtatgggcttaagtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgggagctgcaccatgtgcctcttgatgggaatgggatatagtatgggcttaagtggt 260
Query: 61 caggaaagataagaagatatctatatatctatctctatctctatctatctata--tatac 118
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||
Sbjct: 261 caggaaagataagaagatatctatatatctatctctatctct--ctatatatacatatac 318
Query: 119 atatacatacacacacacata--catatatatacatatatatatgtgtgtgtgtatatat 176
||||||||| ||| | ||||| |||||||||| ||||||||| ||||||
Sbjct: 319 atatacatatacatatacatatacatatatata--tatatatat----------atatat 366
Query: 177 atatatatatatatatatatatacagagagaga 209
||||||||||||||||||||||| |||||||||
Sbjct: 367 atatatatatatatatatatataaagagagaga 399
Score = 81.9 bits (42), Expect = 4e-20
Identities = 84/106 (79%), Gaps = 14/106 (13%)
Strand = Plus / Minus
Query: 170 tatatatatatatatatatatatatatatacagagagagatatatatatatatatg---- 225
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 387 tatatatatatatatatatatatatatat----------atatatatatatatatgtata 338
Query: 226 tgtgtgtgtgtgtgtgtgtgtatatatatatatagagagagagaga 271
||| | ||| | ||| | ||||||| |||||||||||||| |||||
Sbjct: 337 tgtatatgtatatgtatatgtatatgtatatatagagagatagaga 292
Score = 60.7 bits (31), Expect = 1e-13
Identities = 46/57 (80%), Gaps = 10/57 (17%)
Strand = Plus / Minus
Query: 142 tatatatacatatatatatgtgtgtgtgtatatatatatatatatatatatatatat 198
|||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 389 tatatatatatatatata----------tatatatatatatatatatatatatatat 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 128
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 6
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
