BAC Information

Click to search

BAC

Clone NameMSMg01-431H02
Chromosome4 (Build37)
Map Location 123,196,893 - 123,197,130
singlet/doubletsinglet
Overlap geneMacf1
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, D830031N03Rik
Downstream geneLOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431H02.T7 (MSMg01no431_h02.b1)MSMg01-431H02.TJ (MSMg01no431_h02.g1)
ACCAG523700AG523701
length759877
length of high quality
(start - end)
241 (68 - 308)88 (65 - 152)
definitionCHROMAT_FILE: MSMg01no431_h02.b1 PHD_FILE: MSMg01no431_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:45 2005CHROMAT_FILE: MSMg01no431_h02.g1 PHD_FILE: MSMg01no431_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACACAATCCGCGGAATTCCA
TCTGTTTTCCCTACATGCTGTGGAGCAAGCACAGGTGCCACCAACACACG
TGATAGATAAATAAGTAGATAGGTAGATAGACAGATATTGAACTAACTGT
CTTTAAGAGGTTGGATGGCTGACTTGGTGAGAAAAGGGCTTCCTGTGCAA
ACATGCAGACCAGAGTTCAGATCCCCTGCAGCCATGTAAAAAGTCATAAA
TAGTGGTTATGTAGCTTAACTGGTGAGTTTCACATTCAGTAAGAGACCCT
GTTTCATAAAAATTTTTTTTAGAAAACTCTTATCAAAAAAAAACATACTA
ACTACTTTCAAAAAACAAACCAATAAGATGATCAATGATATAAGAGGAAG
ATGCCCAGCGCTGACCTTCCCCTGCCTGTGTGCACATACATACATGACTG
CATTCCCACATCCGCCTTTGTGAATTTTACTGTCTGGCAGACAACTTCAT
ATATTTTTCCGCTGTTTCCCCCCCTCCCTCTTTTTGCTTTCCCCCCTTTT
TGATTCCCATTTCCCCCTTTCTTCCCTCGTTCTTCCTCTACTTTTTTCAC
TCACTCCCTCACACTCCTGTTTTATCCCCCCCCCCCTTTTCCTCCTTCTT
ACCCCCTCCCCTTCTTTCCTCTTCCCCCCCCTTTCACTCTTTTTTCTTTC
CCTCCTACCTCTTTTCTTTATCCCCCCCTCCTCCCTTATTTTCTTACCAC
CTATTTCTN
GTGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTGAGTGACTCCCGGAGGAGGTTGATGTTTGGAGC
AAGGTCTCCAAGTAGAATATCTCTTCCTTTGCAATTAATAATGGGCAATG
GGCGGGGGGGGCTCTTTTCTTTTCTTTTTTCTTTTTTCTCTTTCCTCCCT
TCTCTTTTTTTTTTTTTTCTCCCTCCTCTTCCCTCCTCCTTTTTCCTTCC
TTTTCCCCCCCTCTCCTTTCTTTTTTTTTTCTCTCTTCCTCTCCCCCTTT
TTCCCTCCCCTTTCCTTTCATCTTTTTTTCTTCCCTCTTTTCCCTCCTCC
CCTTCTTCCCCTCTTCTCTTCTTCCTCTTTCCTCTTTTCCCTCTTTCCTT
TCCCCCTTCCTGTTTTCTTTTTTCCTCTCCTTCCCCCACCTTTCTTCTTT
CTCTCCCTCCCCCCTTTTTTCCTCTTTCCTTCTCCCTCTTTCCCTCGTTC
TTTCTTTCTTCTTTCTTCCTCCTTTCCTCTCTCTCCCTCCCTCCTCTTTC
TCCTTTTCCCTTTCCCTCTTCCTTCTTCTCTTCTTTCTCTTTTTTTTTCC
TTCTTTTTTTCCTCTCCTTTTCTTTTTCTTTTCTCCTTCTCTCTCTCTTC
CTTCTTTTTCTCTCCCCTTTTGTTTTCCTTTTCCTTCTTCTTTCTTTCCT
CTTTCTACCCTTTTTCCCTTTTCCCCCTTCACTTTTTCCCTCCTTTTTTT
TTCTTTCTTCCCCCCTTTTTTCTTCTTCTCTTTTCCCCCCCCCCCTTCTT
TTCTCCTTTCCCACTTCCCCGTTTCTCTCTTCTCCCCCTCTTTTCTTCTT
TTCTTATTCTCTCTCTTCTCTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_h02.b1 MSMg01no431_h02.b1 CHROMAT_FILE:
MSMg01no431_h02.b1 PHD_FILE: MSMg01no431_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:45 2005
         (241 letters)



>mm_chr4_123196668_123197308
          Length = 641

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgtggagcaagcacaggtgccaccaacacacgtgatagataaataagtagataggtagat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgtggagcaagcacaggtgccaccaacacacgtgatagataaataagtagataggtagat 404

                                                                       
Query: 62  agacagatattgaactaactgtctttaagaggttggatggctgacttggtgagaaaaggg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agacagatattgaactaactgtctttaagaggttggatggctgacttggtgagaaaaggg 344

                                                                       
Query: 122 cttcctgtgcaaacatgcagaccagagttcagatcccctgcagccatgtaaaaagtcata 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 343 cttcctgtgcaaacatgcagaccagagttcagatcccctgcagccatgtaaaaagtcaga 284

                                                                     
Query: 182 aatagtggttatgtagcttaactggtgagtttcacattcagtaagagaccctgtttca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aatagtggttatgtagcttaactggtgagtttcacattcagtaagagaccctgtttca 226


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)