BAC Information

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BAC

Clone NameMSMg01-431H06
Chromosome4 (Build37)
Map Location 149,863,304 - 149,863,657
singlet/doubletsinglet
Overlap geneRere
Upstream geneLzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091
Downstream geneSlc45a1, LOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3, Camta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431H06.T7 (MSMg01no431_h06.b1)MSMg01-431H06.TJ (MSMg01no431_h06.g1)
ACCAG523708AG523709
length769776
length of high quality
(start - end)
354 (101 - 454)---
definitionCHROMAT_FILE: MSMg01no431_h06.b1 PHD_FILE: MSMg01no431_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:46 2005CHROMAT_FILE: MSMg01no431_h06.g1 PHD_FILE: MSMg01no431_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATT
CCACTGCTTTTCCCTGCTAATCCTGATTGGCTCCCTAGTAAACCATAGTC
ACAGCCCCTACCTGGGCTCTCTCTGCAAACAAGAGGTAAAAACAAACAAA
ACAAAACAGCTTCACCTGGGTAGAGAGGGCTACTTCATGGTCAGACATCA
AGCCACAGGTACCAAATGTGACCTTGTCCATACCTCTGCCTTCTTTGGCA
GCAAACCCTTTCCATTTCCACTCTCCTCCTACTCAATGCAAAAAAATCAC
ACAAAATACACATACACCACAGCAAAAACTAACATACAAGAATAAAGAAA
AGTATGTGAATCTCAATTTTAACATAGATGTCAATGTTTATAGTCTCTCC
AAGCTGGAAAGAGAATTGCCACAAACTCCAAAAAGAAGGCTTTGCTCCTT
CAGAAAGAACAGAAGAGAAGCTGATGTGATATGACAGTTCCCTTTGACAA
CACACTAAGATGATACAGTTGGAATCGGCATCCACAGCTATCCCCCTCAT
GTGTCACCTCACAAGAAACATAAATTTGCTCCAACCGAACAGGCTCCTCA
CTCCAAACAAAGTTTCTTCCCACCTCCTAAAGTATACCAAATAGTTGGCC
CCCCTATCCACCCTTTTCCTAATATCCGTCCCACATTATCCATTTTCGGC
GTGCCCCACCGGTTATCCCCCCTTCTTCACCACCGCCTCACATGATGTCC
ACCCTCCCCCATTTCTCTG
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGCATTCCTACAAGTTCTCATCATGCT
ACCACCCCCCACACAAACACAATCAATCTCGCTCGCTGCAGCTGTATATT
TGAGATACAGGTTGGACCACTAGAGTTGAAAATCAGCATTTGCTATCTCC
TGACTTATGCTTTATGTCTTAGCTTTCCTTGCTCATCTGGTTGTAACTTC
ATGAACAGCCCTTTCTCCTCCGTGAATTAATCTCTCCACATACTGACTAC
TGACACAGGTGATCGACAATATATTAGACATAGGCCAAATTGTCTGGCTA
TTTCCCTCTGGTCAAAATAAAACACTAAATTAAACAGGTAGTAACCCTTT
AACATAAATATATTATCACACCAAACAAGGAACTCTCTTAGCTAACTGGT
TTCATCCAGAGCCCATGTGTTTATTCATCAACTTTACACTTCCTCGATAA
ATCCTTTTTCTTAACTTATCCCTCTTTATCTTTTTTTTCCCTTCTTTTTA
ATAACTTTCTTCTCTCCTTCCCCCTCCTTTTTAATTTTCTCTCCCCTTTT
CTCCCCTTTCTTATTTTTTCTTCTTTTCCCCTTTCTCTTTCTCCTTTCTT
TCTTCACCTTTTCTCTCTATTCCCTCCCCTTTCTTCTTCCTTCCCCACCC
CCCTCTTTTTCTTTTTCATTACCTCATTCTCTTTCTTCCTTTTTCCTCTC
TTCTTTACATTACCTTATTCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_h06.b1 MSMg01no431_h06.b1 CHROMAT_FILE:
MSMg01no431_h06.b1 PHD_FILE: MSMg01no431_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:46 2005
         (354 letters)



>mm_chr4_149863104_149863857
          Length = 754

 Score =  661 bits (342), Expect = 0.0
 Identities = 351/354 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcccctacctgggctctctctgcaaacaagaggtaaaaacaaacaaaacaaaacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acagcccctacctgggctctctctgcaaacaagaggtaaaaacaaacaaaacaaaacagc 495

                                                                       
Query: 61  ttcacctgggtagagagggctacttcatggtcagacatcaagccacaggtaccaaatgtg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 494 ttcacctgggtagagagggctacttcatggtcagacatcaagccacaggtaccaaacgtg 435

                                                                       
Query: 121 accttgtccatacctctgccttctttggcagcaaaccctttccatttccactctcctcct 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 accttgtccacacctctgccttctttggcagcaaaccctttccatttccactctcctcct 375

                                                                       
Query: 181 actcaatgcaaaaaaatcacacaaaatacacatacaccacagcaaaaactaacatacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 actcaatgcaaaaaaatcacacaaaatacacatacaccacagcaaaaactaacatacaag 315

                                                                       
Query: 241 aataaagaaaagtatgtgaatctcaattttaacatagatgtcaatgtttatagtctctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 314 aataaagaaaagtatgtgaatctcaattttaacatagatgtcaatgtttatagcctctcc 255

                                                                 
Query: 301 aagctggaaagagaattgccacaaactccaaaaagaaggctttgctccttcaga 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagctggaaagagaattgccacaaactccaaaaagaaggctttgctccttcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)