BAC Information

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BAC

Clone NameMSMg01-431I24
Chromosome4 (Build37)
Map Location 36,101,709 - 36,101,943
singlet/doubletsinglet
Overlap genenone
Upstream geneMobkl2b, 3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132, LOC545600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431I24.T7 (MSMg01no431_i24.b1)MSMg01-431I24.TJ (MSMg01no431_i24.g1)
ACCAG523792AG523793
length814773
length of high quality
(start - end)		253 (37 - 289)409 (65 - 473)
definitionCHROMAT_FILE: MSMg01no431_i24.b1 PHD_FILE: MSMg01no431_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:55 2005CHROMAT_FILE: MSMg01no431_i24.g1 PHD_FILE: MSMg01no431_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCACAT
TTCATTGCCAGAAAAGACTAAATCTAGTCTGGGCAAGCCAAGTGAATTTT
AAGTCATTTCAGATCAAGAACTAAGTCGCAGAATAGTAGTGACCTGGAAA
TCAGTGGCTCTTCAGGGAAATGAAAATCAAATAAGCCTTTTAACATCAAT
CTTTGAATTATTCCTGTAAGGAATAATATTCCTACCTTCCTTCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTTTCTTTCTTTCTCTCCT
CCCNCCCTCCCCCTTTTTTTCTTTTCTCCCNCCCCCCCTCCCCCCCCCCC
CCCTTTTTTCTCTCCCCCTCTNTCTGCGGGGCTCTCTTCCCCCTTTTTCC
TTTTTTTGTCTCCCCCCCCCCCCTGGTTGTTGTTTTGGTCGTTTGTGTTT
TCCGCTTTGGGGTTCCTTCGGTCCGCCTTTGCCCCGTGTGCCCTGTTCTT
CCTTTTTGTTCTCTTGCTTCCTTTTTTTCGCCCCTCTTTTCCCCTTTCTT
CTCTCCCCTGTTTCTTCCTCCCTTCTTCTTTTTTTCTCGCTGCTTCGTTT
CGTTCTTCTTCCTCCCTTCTCTGTTCCTCCCTTTCGCCCCCTTCCCCTGT
CTGTCCCTTTTGTGTTCCTGGCCGTTTCTTGTTTCTTCTCTGTTTCTCTT
TTCTTTCTTCTGCCGCTTCCCATTTCCCCCCGCTCCTCGTTTTTCCTTTT
TTCCTTTCTCGTTCCTCCTCTCTCTCTTTTTTTCTTCTCCTCTTCTCGTT
CTGTTTCCTTTTCG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCACATTTGTCACTGGCCAGTGGAATGTGAGTTTTT
ATGCTTGGAAAGGCTAAATGGAGGCAAGTGGAGTTGCCTCTACTAGGAAA
ATCAGTGAATCAAAGCCAATATTTCATCCTAGGAGGACTAAAGAAATTAA
TGTCACCACCAAGGGATTGAGAGAGTCAGGGTCATATTTTCCACATTTCC
CTATACCTGAACAGTGAAGAAGATACATGGATTATGTATAATGATAGCTG
ACTATGAAAACCTCCATCAGGTAGTGACCCCTATTGCAGGTGTTATACCA
GATCCAGTATCAATATTTGAGCAAATTACCATATTTCCTGGTATGTGATA
CACAGCTATTGATTAGTAAATGCCTTTTACTTAGTGTCTACCCATACTGA
CCACCAGAAGCAATTTTCTTTCAGTTGGTAAGGCCAGTAGTGTATCTTTA
CATTTTTACCTCAAGGGTATAGTAATAATTCTCTTACCCTGTGTTATAAC
TTAGTTCAAAGGGATCATAATCATCTTTCCTATTCTAAAATAATCACCTG
GATTCTTTATTTGGGGGGGCTTATGCTGATTTAAACAAGGGGGGCGGAAG
TAGGAAACCATTTTGTCCCGGGCCAACTGGTTGGTTTTTAAAGAGGGGGA
AAAATTTCTCCCCATATCTCGGGGGCCTCCCTTTTTCGGGGAAATTTCTT
AATAACAGGGGTGGGCGGGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_i24.b1 MSMg01no431_i24.b1 CHROMAT_FILE:
MSMg01no431_i24.b1 PHD_FILE: MSMg01no431_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:55 2005
         (253 letters)



>mm_chr4_36101550_36102202
          Length = 653

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatttcattgccagaaaagactaaatctagtctgggcaagccaagtgaatttt 64
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaattcacatttcaacgacagaaaagactaaatctagtctgggcaagccaagtgaatttt 335

                                                                       
Query: 65  aagtcatttcagatcaagaactaagtcgcagaatagtagtgacctggaaatcagtggctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aagtcatttcagatcaagaactaagtcgcagaatagtagtgacctggaaatcagtggctc 275

                                                                       
Query: 125 ttcagggaaatgaaaatcaaataagccttttaacatcaatctttgaattattcctgtaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttcagggaaatgaaaatcaaataagccttttaacatcaatctttgaattattcctgtaag 215

                                                                  
Query: 185 gaataatattcctaccttccttcctccctccctccctccctccctccctccctct 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaataatattcctaccttccttcctccctccctccctccctccctccctccctct 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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