BAC Information

Click to search

BAC

Clone NameMSMg01-431L13
Chromosome4 (Build37)
Map Location 49,858,373 - 49,858,843
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431L13.T7 (MSMg01no431_l13.b1)MSMg01-431L13.TJ (MSMg01no431_l13.g1)
ACCAG523914AG523915
length751752
length of high quality
(start - end)		471 (62 - 532)458 (66 - 523)
definitionCHROMAT_FILE: MSMg01no431_l13.b1 PHD_FILE: MSMg01no431_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:09 2005CHROMAT_FILE: MSMg01no431_l13.g1 PHD_FILE: MSMg01no431_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
AAATCCTCTCCGCTGTCTTTGCGTACATCCGCCAAAGGGAATTGTGCCAA
CTACAGACTCTGCGTTTGAGGGGCGAGGACTTTGCAGGGGCGCGGGACTG
TGCGGCAGGAGAATCTCACCATCAGTGGGCGTTTAGCGCAGCCAAGCGAC
AGGCTGGCGCCAGGGCTCTGCTACTGGGAGGCGCCGGCTGAGGCGGGGAG
AACTTTGGCGCTCGGAACAGAACCACCCTTCGCTGGCCAGTTGTGTCGCT
CCTCCAAGGAAGCCGCTTATGTGGCGCCTGGGCGAAAAGCCCGGCAGAAA
AAGGAAGAGAGGAAGTAGAAAGGGAAGAGGGGAAAATGAAACAGGCGCTG
GGGGAGCCCGCGGTAAGGTGGCCGGCGGGGAAAGGAAGCAGGTTCGGCAG
CTGCTTTTCCGCACCCCGTGCGTGAACGCCCTCTCCTCTGCCACCCCAGT
AAATAAGTGGGTGTCTCCTGAACTGAACAGCAAGAGAAAAGAAGCCAGNC
CAGTGAGAGTACAGCTCCTCTGTCACTGCCGCCCCCTTGNAAGTCTGGGG
GCTTCTCGCGGGGCCGACGCTGCGCCCCAGGAGCCTGGAAAATGGGGTGG
AAGGGGACCGGAGCTCAACCCCCGGGGACCCCGCTGTGCAACCGCCCTGG
GGGTTTGTTAAAAATGTTAATGGAAGACCTCTGAACCCCTCCACACTGGC
G

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGC
AGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TACACAATGGAGTACTACTCAGCTANTTAAAAGAATGAATTTATGAAATT
CCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGTAACACA
TTCACAAGAAACTCCACAATATGTACTCACTGATAAGTGGATATTAGCCC
CCAACCTAGATACCCAGAATATAAATATATTTTGTTAACCCCTGGAACTC
CTAAAAATGAAGAACGAGGGGGGGACCAATCCCCCCCTTAATTTGGGAAA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_l13.b1 MSMg01no431_l13.b1 CHROMAT_FILE:
MSMg01no431_l13.b1 PHD_FILE: MSMg01no431_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:09 2005
         (471 letters)



>mm_chr4_49858173_49859043
          Length = 871

 Score =  872 bits (451), Expect = 0.0
 Identities = 466/471 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgtctttgcgtacatccgccaaagggaattgtgccaactacagactctgcgtttgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gctgtctttgcgtacatccgccaaagggaattgtgccaactacagactctgcgtttgagg 612

                                                                       
Query: 61  ggcgaggactttgcaggggcgcgggactgtgcggcaggagaatctcaccatcagtgggcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ggcgaggactttgcaggggcgcgggactgtgcggcaggagaatctcaccatcagtgggcg 552

                                                                       
Query: 121 tttagcgcagccaagcgacaggctggcgccagggctctgctactgggaggcgccggctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tttagcgcagccaagcgacaggctggcgccagggctctgctactgggaggcgccggctga 492

                                                                       
Query: 181 ggcggggagaactttggcgctcggaacagaaccacccttcgctggccagttgtgtcgctc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggcggggagaactttggcgctcagaacagaaccacccttcgctggccagttgtgtcgctc 432

                                                                       
Query: 241 ctccaaggaagccgcttatgtggcgcctgggcgaaaagcccggcagaaaaaggaagagag 300
           |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctccaaggaagccgcggaagtggcgcctgggcgaaaagcccggcagaaaaaggaagagag 372

                                                                       
Query: 301 gaagtagaaagggaagaggggaaaatgaaacaggcgctgggggagcccgcggtaaggtgg 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 371 gaagtagaaagggaagaggggaaaatgaaccaggcgctgggggagcccgcggtaaggtgg 312

                                                                       
Query: 361 ccggcggggaaaggaagcaggttcggcagctgcttttccgcaccccgtgcgtgaacgccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccggcggggaaaggaagcaggttcggcagctgcttttccgcaccccgtgcgtgaacgccc 252

                                                              
Query: 421 tctcctctgccaccccagtaaataagtgggtgtctcctgaactgaacagca 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tctcctctgccaccccagtaaataagtgggtgtctcctgaactgaacagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |