Query= MSMg01no431_o14.b1 MSMg01no431_o14.b1 CHROMAT_FILE:
MSMg01no431_o14.b1 PHD_FILE: MSMg01no431_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:26 2005
(246 letters)
>mm_chr4_81007521_81008163
Length = 643
Score = 414 bits (214), Expect = e-120
Identities = 237/246 (96%), Gaps = 3/246 (1%)
Strand = Plus / Plus
Query: 1 aaagctttgtattatgtgcaaataaggtctctacagtgcataaaattatatagattaagt 60
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagctttgtattatatgcaaa---ggtctctacagtgcataaaattatatagattaagt 257
Query: 61 agggaaaatgttaacttctctctcagaacaaaacatatgacaacaacaacaaacctaaga 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agggataatgttaacttctctctcagaacaaaacatatgacaacaacaacaaacctaaga 317
Query: 121 acaaaagaacgtgaaacaggttaagccaaccccacttatctgcatgagcatgtcaaatct 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acaaaagaaagtgaaacaggttaagccaaccccacttatctgcatgagcatgtcaaatct 377
Query: 181 aagaaaggtgtgtttgtctagtctgtgttctgcctttactttcatattctatggcactgc 240
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 378 aagaaaggtgtgtttgtctagtctgtgtgctgcctttgctttcatattctattgcactgc 437
Query: 241 ccagag 246
||||||
Sbjct: 438 ccagag 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 643
Length adjustment: 9
Effective length of query: 237
Effective length of database: 634
Effective search space: 150258
Effective search space used: 150258
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no431_o14.g1 MSMg01no431_o14.g1 CHROMAT_FILE:
MSMg01no431_o14.g1 PHD_FILE: MSMg01no431_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:26 2005
(292 letters)
>mm_chr4_81159379_81160070
Length = 692
Score = 534 bits (276), Expect = e-156
Identities = 288/292 (98%)
Strand = Plus / Minus
Query: 1 actctgaatgctttttagttgtccaatgaaataggtcattaattctgtattctacaaacc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 actctgaatgctttttaattgtccaatgaaataggtcattaattctgtattctacaaacc 433
Query: 61 caagagatccctacaccatcttcccatcatccactgtaaatgccagcgcaaaggaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 caagagatccctacaccatcttcccatcatccactgtaaatgccagcgcaaaggaaatat 373
Query: 121 tcactgcttgtatggtggtagattaggtgtactttgccagttttgtatagaacaaatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcactgcttgtatggtggtagattaggtgtactttgccagttttgtatagaacaaatgac 313
Query: 181 tcaaggaagaattcccattctcattcagaataaatcacggtcaaaggcactgcagcggga 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 312 tcaaggaagaattcccattctcattcagaataaatcatggtcaaaggcactgcagcggga 253
Query: 241 ggcctggttatcaggcaatgcttgaggtctcagggtggttgtgagatcctcg 292
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggcctggggatcaggcaatgcttgaggtctcagggtggttgtgagatcctcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
