BAC Information

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BAC

Clone NameMSMg01-431P08
Chromosome4 (Build37)
Map Location 113,751,640 - 113,751,981
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC230622, LOC100040607, LOC242627
Downstream geneLOC100040625, A630098G03Rik, LOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431P08.T7 (MSMg01no431_p08.b1)MSMg01-431P08.TJ (MSMg01no431_p08.g1)
ACCAG524096AG524097
length771768
length of high quality
(start - end)		479 (41 - 519)467 (69 - 535)
definitionCHROMAT_FILE: MSMg01no431_p08.b1 PHD_FILE: MSMg01no431_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:30 2005CHROMAT_FILE: MSMg01no431_p08.g1 PHD_FILE: MSMg01no431_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATT
CAAGGCCCTTTCCTAAACATGATAAAAGCAATCTACAGTAAACCAGTAGC
CAACATCAAATAAATGGAGAGAAGCTGAAAGCAATCCCACTAAAATCAGG
GACTAGACAAAACTGCCCACTTTCTCCCTACCTTTTCAACATAGTATTTG
AAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAA
ATTGGAAAAGAGGAAGTCAAAATATCATTTTTTGCAGATGATATGATATT
ATATATAAGTGACCCTAAAAATTCCACCAGAGAACACCTAAACCTGATAA
ACAGCTTCGGTGAAGTAGCTTGATATAAAATAAACTCAAACAAATCAATG
GCCTTTCTCTACTCAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAAC
AACACCCTTCTCAATAGTCACAAATAATATAAGATATCTCAGCGTGACTC
TAACTAAGGAAGTGAAGATCTGTATGATAAAAACTTTCAGTTTCTGAAGA
AAGAAATTAAAGAAGATCTCCGAAGATGGAAAGATCTCCCATGCTCATGG
ATGGGGACGAACCAAATTTGGAAAAAGGGGTATCTTGTCCAAAGAATCCA
CAGAATTCATGGCATCCCCAACCAAATTCCCCCCCAATTCTTCACCAAAT
AAAAAGGAAGAATTTGCCATTTCCCTTGGGAAAAAACAAACCCACGGAGG
TGTAAATCCTTCCCCTGGTAG

AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAAATAGAAAGACAACTATGGTTTTATATTT
TTACTATATATAAGATTCCAAAGAAAAGTAGAATAAAGACTATATTACTA
TATTTGATTTCTAAAAATTGCTGTTATATATCAGATGCAGAAAAAATGGT
TCTCTTTTTTTAAAATATTTTTATTAGGTCTTTTTCTCATTTACATTTTC
AATGCTATCCCAAAAGTCTCCCATACGCTCCCCCCACTCCCCTACACACC
CAATCCCACTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATATCCAA
TGGGCCTCTCTTTCCAGTGATGGCCTACTAGGCCATCTTTTGATACATAT
GCAGCTAGAGTCAAGAGCTCCGGGGTATTGGTTAGTTCATAATGTTGTTC
CACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCT
CCTCCATTGGGGGCCCCGTGATCCATCCAATAGCTGACTGTGAGCATCCA
CTTCTGTGTTTGCTAGGCCCCGGCCTATTCTCACAAAGACAGCTATTTCA
GGGTCCTTTTAGAAAACGCTTGCTACTGTATGCAAAGGTGTCCCTCCTTT
GAAGGCAAATTATGGATGGATCCCTGGAATTGGGATCTCCAAAATGGCCC
TCTCTTTTTGTTTCTTTCCCAAATTTTTTTTCGGTAACCCCTCCCTTGGT
GGAAGGGTTTCCACTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_p08.g1 MSMg01no431_p08.g1 CHROMAT_FILE:
MSMg01no431_p08.g1 PHD_FILE: MSMg01no431_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:30 2005
         (467 letters)



>mm_chr4_113751640_113752506
          Length = 867

 Score =  491 bits (254), Expect = e-143
 Identities = 316/344 (91%), Gaps = 15/344 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaatagaaagacaactatggttttatatttttactatatataagattccaaagaaaag 60
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agaaat--aaagacaactatggttttatatttttactatatataagattccaaagaaaag 285

                                                                       
Query: 61  tagaataaagactatattactatatttgatttctaaaaattgctgttatatatcagatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tagaataaagactatattactatatttgatttctaaaaattgctgttatatatcagatgc 225

                                                                       
Query: 121 agaaaaaatggttctctttttttaaaatatttttattaggtctttttctcatttacattt 180
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 224 agaaaaaatggttctcttttttaaaaatatttttattaggtcttttcctcatttacattt 165

                                                                       
Query: 181 tcaatgctatcccaaaagtctcccatacgctcccccc-actcccctacacacccaatccc 239
            ||||||||||||||||||| ||||||| |||||||| |||||||||| |||||| ||||
Sbjct: 164 ccaatgctatcccaaaagtcccccatacactcccccccactcccctacccacccactccc 105

                                                                       
Query: 240 actttt-ggccctggtgttcccctgtactggggcatata-----------tccaatgggc 287
            ||||| |||||||| |||||||||||||||| |||| |           ||||||||||
Sbjct: 104 cctttttggccctggcgttcccctgtactgggacatacaaagtttgcgtgtccaatgggc 45

                                                       
Query: 288 ctctctttccagtgatggcctactaggccatcttttgatacata 331
           |||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 44  ctctctttccagtgatggccgattaggccatcttttgatacata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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