BAC Information

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BAC

Clone NameMSMg01-431P18
Chromosome4 (Build37)
Map Location 77,357,114 - 77,357,595
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431P18.T7 (MSMg01no431_p18.b1)MSMg01-431P18.TJ (MSMg01no431_p18.g1)
ACCAG524114AG524115
length1,266785
length of high quality
(start - end)		---484 (61 - 544)
definitionCHROMAT_FILE: MSMg01no431_p18.b1 PHD_FILE: MSMg01no431_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:32 2005CHROMAT_FILE: MSMg01no431_p18.g1 PHD_FILE: MSMg01no431_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCTACCCCGCCTTGTGTACTAATATTATATAGCTTTTCTCCAGTAAAT
AACGCCGGTGTGTCACTCAGCTGTCGCACCCTGTTTCTCTCTGACCTATC
ATATGATGGACCAGTGTCGTCATATCACGCGCGCCGACCGGATCCATCGT
TATACCCTATACACATTACTATAAGATCACCACAAGATGACAGCCCCACT
CGCTGGACTCACTATCGGATATTATCCATTATAGGCCCACTTCACAATAT
ACATAGTATTAATACCTCATTTCGGGAGCAGGGTCCAAACGCCGCGTCAT
AACTAGAGATCATCTACAGAAGGTCTGGGAATATCCAAATTATATCTATG
CGTCACTTGTGCATGACTCACGATTGACATACAAGCTGCTCGCCCCCCGA
TAATAACCCTGGTTTTATGCGCGGTAACACTTCATCTACGAATCACTCTT
CAAACATTGCACGTAATTCAATACTCCCCGGCACGTTAACATACACCACT
TTACACCGGACGTTCTCACATAGTCGCGGCACTGACGGCCTCGGCCAATT
ACTCCAATCTGGTAAAGTATAAACTGACAGACGTAGAATCTTCGAATAAA
GTTATTGGCGCCCCCATCCAATTTTTTACGGCGACCGCTATCCACCTACC
ATTCAAATAGATCTCCCCTCTCATGAAGTTACTANCGTTCCACACCTCGC
ATAATCGCGATCGATCCGGCTCGCATATTCGTCCTAAATATTATCCGTAA
TAGACATATTTGTGAGGCGGAATACCTATGGTGCACCTCACGGTTATCTT
TACTCCATACCTGTCCGTAAACGTATCAGTTACATACGTCCTACACTTAT
CCACAGTGATACCGTATAGAGCACGTTACTACTAACACTCTCCTCTCATC
CCTCATAATATTATATTCCCTTAATATACCGACACCGACGGTTTGTCAAT
GTCGCCGCCCTCATTATATTTCGCCTTATCGTCGATGCACTCATTTCTCC
AAGATAGCGTCATAACTCATGTCTTGTGTAATAGCTACACTCACCGACAA
CATATAACTGATTTTTGTAATATGTACGCCCTGTCCGCTCAAATCAGGAT
CAACAATAAAATTAATCGCCCCTCTCTACTCTCTCCGCACTCGCATCGCC
CCAGCCGCGCCTCTATCAGCCTCATGACATACGTTACCCGNCCCAAGTCT
TGATAGCAGTCATTGCCGACAGGCGACTGGAAGCACATGTACAGACTGAT
CACCGTACAAAACCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCTCAAAAACGAAATTTAAGCAATAAAGGGTGTGGTCCGG
TTTATAGTTCTAGGAGGGAGTTATCATGAAGATAAAGTAAAGAAAGAGAA
GCTTGAAGCATCTGCTCACATTGCACACACACTCATGAAAAAGGATAAAT
GAGTGGATGCTCATGTACTCCATATGTATACCTGAAGTCTTGTTTAAAAT
TAAAATAAATCTTCCCGTATTAGTTAGGTAAACAAGGCAAATGCCTACAT
GCAAAAAGAAAATTCCATCTTCCTGCTTGTTCTAGATTCTGTTAAGCTGA
CAACTAACATTAATTATCTCAAGCCTTGGGTCTATTTGCTGGTTTTTACT
CATTCCCATCTGAAATCTCATGTTCATGACCATTGTTAACAATCTAATCT
GAATCCTCACAATAATCATTAACTAAACTCTGCTTAGACCACGGTAGGCT
GTTTCCAACTCACATCACCAAACATTTCCTAATGCTTCCCAAAAATAAGT
TCCAGAGACTTAAAAAGGCATATGGTAAGAATTAGATACNATCACAACTC
AACATCTTTGGGACTAATATTCTGGCCTTATTATTTTATAATTGTNAAAA
AAAAACTCCCACAAACATTGTTAGAAAAAAAAGGGATTTATTTTAAAGCA
TGATTTCCCGGTGGAACCCCGGGGAAGACACCAGAAAACGGTTTACTCCT
TTTTTGGGCGCCCGAAAAAAAAAAAAATTTTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_p18.g1 MSMg01no431_p18.g1 CHROMAT_FILE:
MSMg01no431_p18.g1 PHD_FILE: MSMg01no431_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:32 2005
         (484 letters)



>mm_chr4_77356913_77357795
          Length = 883

 Score =  882 bits (456), Expect = 0.0
 Identities = 477/484 (98%), Gaps = 2/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcaaaaacgaaatttaagcaataaagggtgtggtccggtttatagttctaggagggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cctcaaaaacgaaatttaagcaataaagggtgtggtccggtttatagttctaggagggag 261

                                                                       
Query: 61  ttatcatgaagataaagtaaagaaagagaagcttgaagcatctgctcacattgcacacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttatcatgaagataaagtaaagaaagagaagcttgaagcatctgctcacattgcacacac 321

                                                                       
Query: 121 actcatgaaaaaggataaatgagtggatgctcatgtactccatatgtatacctgaagtct 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 actc-tgaaaaaggataaatgagtggatgctcatgtactccatatgtatacctgaagtct 380

                                                                       
Query: 181 tgtttaaaattaaaataaatcttcccgtattagttaggtaaacaaggcaaatgcctacat 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttaaaattaaaataaatcttctcgtattagttaggtaaacaaggcaaatgcctacat 440

                                                                       
Query: 241 gcaaaaagaaaattccatcttcctgcttgttctagattctgttaagctgacaactaacat 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaaaagaaaatcccatcttcctgcttgttctagattctgttaagctgacaactaacat 500

                                                                       
Query: 301 taattatctcaagccttgggtctatttgctggtttttactcattcccatctgaaatctca 360
           |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 taattatcccaagccttgggtctatttgctggtttt-actcattcccatctgaaatctca 559

                                                                       
Query: 361 tgttcatgaccattgttaacaatctaatctgaatcctcacaataatcattaactaaactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgttcatgaccattgttaacaatctaatctgaatcctcacaataatcattaactaaactc 619

                                                                       
Query: 421 tgcttagaccacggtaggctgtttccaactcacatcaccaaacatttcctaatgcttccc 480
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgcttagatcacagtaggctgtttccaactcacatcaccaaacatttcctaatgcttccc 679

               
Query: 481 aaaa 484
           ||||
Sbjct: 680 aaaa 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space:   413802
Effective search space used:   413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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