BAC Information

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BAC

Clone NameMSMg01-432E09
Chromosome4 (Build37)
Map Location 105,753,318 - 105,886,882
singlet/doubletdoublet
Overlap geneMap1lc3, LOC384039
Upstream genePrkaa2, Ppap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1
Downstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432E09.T7 (MSMg01no432_e09.b1)MSMg01-432E09.TJ (MSMg01no432_e09.g1)
ACCAG524332AG524333
length831813
length of high quality
(start - end)		339 (65 - 403)147 (69 - 215)
definitionCHROMAT_FILE: MSMg01no432_e09.b1 PHD_FILE: MSMg01no432_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:56 2005CHROMAT_FILE: MSMg01no432_e09.g1 PHD_FILE: MSMg01no432_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,886,544 - 105,886,882)(105,753,318 - 105,753,472)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCC
AGTTTAGTTCAGCCCCAGGTTCATCCCACGTTCCACATGAGTCTCCAAAG
GGGACCTGAGTTTCCAGGGCCTTTCTGACTCCTTCCAAAGAGCGTTTGTG
TTTCTTCTCTTTGCATCAGCTGGAGCAGTTCCCAGCAAAGGGACCTGGAA
GGCTCTTCCTGCAGATGCTCAGGTCCTGTGTTAATCTCTTTTTGATGGCC
TTTATCTGCAGGTGGACTCCCTGATGTACTCAGTGCCGGAGGGAGGAGCT
AATCCTTTGCTGTGGTATCTTGTTGACCAATCACTCACTTCTAGAAGTCT
CTCCTTTGGGGCCGGAAGCCTGGCAGTGAGGGAGAAAGGCCTGAGCCGAG
TGGGGAGGTAAGGATGGCTAGGATGTCTGTCCTGGTCTATATGGTTTTTT
TTATTTATTTGTTCCTCATCCTACTTCTACCTTGCGATAACTCTACGATG
TGTCTCTGGAAATTTTTCCTTTTCTGCTTCTCTTTTCCGTTCTTCTCATT
CTTTTCTTTTTCTTCTCCACGTGTATTATCTTCATATTCCTTTACCTTCC
TCTCTCCCCTCTCTTTTTATTATTTTTTAATTATTACACAACTACTATAA
TAATCATTCCACCGTCTTTTCTCATTATATTTGATCTTATTTACTTTCTT
TCTCCCTTCTTATTCCTTTTTTATTTTCCTTTCCATTTCATTTTTATTAT
CTCTTTATTTTGCATCCATATCTCTCTCTTTACCTCTTTTTCTTTTATTA
CATTCACTAACTTATTATCTTACTTCCCATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACAGAGGAAAGCATACAAACTCGAAATGGCT
GCTGGGCACTGGGTACCACCACCTTGATGGCCAACAATCCATTGGGGAAA
TCTAGCTCACCAGATACCTGAAAGGAAGAGGAGGACAGGGGAGAGAGCGG
GAGAAGGGAGGGAGTGNNNNNNNNTNNNNTNNNNNNNNNNTTNNNNTNCT
TTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTTTTTTTTTNTNNTTT
TTTTNNNNNNNNTTTTTTTTTTNTTTTTNTNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTCTCCTTCTCTTTTCTTTTCTCTCTTTTTTCTCTCTTTTTTT
TTTCCTTCCCCCTCTTTCTCTTTCTCTTCTTTTCTCTTTCCTCTCTCTTT
CCCTCTTTCTCCTTCTCTCCTTTTTTCCTTCTTTTCTTCCCTTTCTTTCC
TTTTCTTCTCTTTTTTCTCCTTCTTTTTTTTCTTCTCTCTTTCTCTCTTT
TTTCCCCTCTTTTTTCTTTTTCTTTTTCTCTTCTTTCTCTCCTCTTTTTC
TCCTTTTCTCTTTTTCTTCCCNCTCTCCGTTTTTNCCTTCTCTTCCTTTC
TTCCCCCCTCTTTCCCTCTCCCCTCTTCTTCTTCCTTTCTTTTCTTCTTT
CCTTTTCTTCCTTTTTTCTCCTCTTCTTCCCTCCCCCTTTTTCTCTCTCC
TTTCCTTTTTCCTTTCCCCTTCTTCTGCNCCTTTTTCTCCCTCCTTTTCC
TTTCTCCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_e09.b1 MSMg01no432_e09.b1 CHROMAT_FILE:
MSMg01no432_e09.b1 PHD_FILE: MSMg01no432_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:56 2005
         (339 letters)



>mm_chr4_105886344_105887082
          Length = 739

 Score =  625 bits (323), Expect = 0.0
 Identities = 335/339 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggttcatcccacgttccacatgagtctccaaaggggacctgagtttccagggccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ccaggttcatcccacgttccacatgagtctccaaaggggacctgagtttccagggccttt 480

                                                                       
Query: 61  ctgactccttccaaagagcgtttgtgtttcttctctttgcatcagctggagcagttccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ctgactccttccaaagagcgtttgtgtttcttctctttgcatcagctggagcagttccca 420

                                                                       
Query: 121 gcaaagggacctggaaggctcttcctgcagatgctcaggtcctgtgttaatctctttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcaaagggacctggaaggctcttcctgcagatgctcaggtcctgtgttaatctctttttg 360

                                                                       
Query: 181 atggcctttatctgcaggtggactccctgatgtactcagtgccggagggaggagctaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atggcctttatctgcaggtggactccctgatgtactcagtgccggagggaggagctaatc 300

                                                                       
Query: 241 ctttgctgtggtatcttgttgaccaatcactcacttctagaagtctctcctttggggccg 300
           ||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctttgctgtgggaccttggggaccaatcactcacttctagaagtctctcctttggggccg 240

                                                  
Query: 301 gaagcctggcagtgagggagaaaggcctgagccgagtgg 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gaagcctggcagtgagggagaaaggcctgagccgagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no432_e09.g1 MSMg01no432_e09.g1 CHROMAT_FILE:
MSMg01no432_e09.g1 PHD_FILE: MSMg01no432_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:56 2005
         (147 letters)



>mm_chr4_105753118_105753664
          Length = 547

 Score =  242 bits (125), Expect = 8e-69
 Identities = 144/155 (92%), Gaps = 8/155 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagaggaaagcatacaaactcgaaatggctgctgggcactgggtaccaccaccttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagaggaaagcatacaaactcgaaatggctgctgggcactgggtaccaccaccttgat 260

                                                                       
Query: 61  ggccaacaatccattggggaaatctagctcaccagatacct--------gaaaggaagag 112
           || ||||||||||||||||||||||||||||||||||||||        |||||||||||
Sbjct: 261 gggcaacaatccattggggaaatctagctcaccagatacctagatacctgaaaggaagag 320

                                              
Query: 113 gaggacaggggagagagcgggagaagggagggagt 147
           |||||||||||||||||  ||||||||||||||||
Sbjct: 321 gaggacaggggagagagatggagaagggagggagt 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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