BAC Information

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BAC

Clone NameMSMg01-432G06
Chromosome4 (Build37)
Map Location 76,771,860 - 76,772,278
singlet/doubletsinglet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432G06.T7 (MSMg01no432_g06.b1)MSMg01-432G06.TJ (MSMg01no432_g06.g1)
ACCAG524420AG524421
length808797
length of high quality
(start - end)
461 (38 - 498)419 (69 - 487)
definitionCHROMAT_FILE: MSMg01no432_g06.b1 PHD_FILE: MSMg01no432_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:06 2005CHROMAT_FILE: MSMg01no432_g06.g1 PHD_FILE: MSMg01no432_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTCAA
GAAGTTATACTCCAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAA
TGGTGCTGGCACAACTGGTGGTTATCATGTAGAAGAATACGAATTGATCC
ATTCCAATCTCCTTGTACTAAGGTCAAATCAAACTGGATTAAGGAACTCC
ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGT
CTCAAAGATAAAAAATTCAGGTGACAGCAGATGCTAGCGAGGATGTGGAG
AAAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGCAGTTCCTCGGAAAATTGGACATAGTACTACCAG
AGCATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACC
GGTAAGAAGGACACATGCTCCTCTATGTTCATAGCAGCCTTATTTATAAT
AGTCAGAAGCTGGAAAGAACCCAGATGCCCCTCATCAGAAGAATGTGTAC
AGAAAATGTTGGAACTTTACACCATGGATTACTACTCTGCTACTACAACA
AATGACCTTTTATACTTTCCTTAGGGTTAGGGTTTGTTCCCTTTATGGAT
CTTTTCTGTAGGGTGTGGATCCCTTTTTCCTGTAACTTCTACCCCTTTTT
GTATTTTCCGGATTTGTGTGTTCTTTTCTCCCTTACTCTCCCGATTCACC
TTACTCTTTCGTGGCCGGTTTTTTCCTTTCTTTTCGCTATTTTTTCCTTG
CTTATTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGAATCTACAAGTAAGCGTGCTTCCCAGTTC
ACAATTTTGCAGATTAGAATTCAATTTTTATTTTGAATTTGGAAATATTT
TTTCTTTTTGTAATTTAATTTTATTTGTAATTCATTTTTTACATTCCATA
TTCCGTTTCCTGCTGCCCATTCACCCTCTGACTGCTCCACATCCCACGCC
TTCTCCCCACCCCACCCTGTCTCCATATGGATGCCCACACCCCCCACCCC
AACTGACCAAAGAAGGTCCAGCGACAGGCTCAAAGTGGGATCCAGCTCAA
GTGGAGGTTCCAAGGCTTGACACTATTACTGAGGCTATGGAGCACTCAAA
ACAAAGGGATCTATCATGACTGCCTCTGAAAGACCCAACAAGCAGCTAAA
AAAGTCAGGTGCAGATATTTGCACACAACCAATGGATAGAAGAAGTTGAA
CCCTGCTGTTGAATTATGGAAAGGTTGAAGAATCCTTGGAGAAAGGTGTT
CCTCTATTGAGACCCTCAGGCTCATTTATTCCTGACTCCCTGATAGGTTT
TCAAACCTCGTTGTTCCATCTCTAACGGTGACACCCACTGATATTAGAGT
CCTAACTGCCTTTCTTTCTTGACGTCTCCCGTTGCTTGCGCGTTTTTCTC
GGTGTGGTACCCTTTGTTTTTCCACCCCTTTGGTTGGACTGTCTTTCTTT
CGCGTTCCCCTGCCCCTCCTCTTCTTTGCAGACCTCTCCTTCGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_g06.g1 MSMg01no432_g06.g1 CHROMAT_FILE:
MSMg01no432_g06.g1 PHD_FILE: MSMg01no432_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:06 2005
         (419 letters)



>mm_chr4_76771660_76772478
          Length = 819

 Score =  772 bits (399), Expect = 0.0
 Identities = 414/419 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaatctacaagtaagcgtgcttcccagttcacaattttgcagattagaattcaatttt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaatctacaagtaagtgtgcttcccagttcacaattttgcagattagaattcaatttt 260

                                                                       
Query: 61  tattttgaatttggaaatattttttctttttgtaatttaattttatttgtaattcatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttgaatttggaaatattttttctttttgtaatttaattttatttgtaattcatttt 320

                                                                       
Query: 121 ttacattccatattccgtttcctgctgcccattcaccctctgactgctccacatcccacg 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacattccatattccatttcctgctgcccattcaccctctgactgctccacatcccacg 380

                                                                       
Query: 181 ccttctccccaccccaccctgtctccatatggatgcccacaccccccaccccaactgacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttctccccaccccaccctgtctccatatggatgcccacaccccccaccccaactgacc 440

                                                                       
Query: 241 aaagaaggtccagcgacaggctcaaagtgggatccagctcaagtggaggttccaaggctt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaaggtccagtgacaggctcaaagtgggatccagctcaagtggaggttccaaggctt 500

                                                                       
Query: 301 gacactattactgaggctatggagcactcaaaacaaagggatctatcatgactgcctctg 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 gacactattactgaggctatggagcactcaaaaaaaagggatctatcatgactgcctctg 560

                                                                      
Query: 361 aaagacccaacaagcagctaaaaaagtcaggtgcagatatttgcacacaaccaatggat 419
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 aaagacccaacaagcagctaaaaaagtcagttgcagatatttgcacacaaccaatggat 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)