BAC Information

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BAC

Clone NameMSMg01-432G21
Chromosome4 (Build37)
Map Location 117,483,787 - 117,484,149
singlet/doubletsinglet
Overlap genenone
Upstream geneMutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17
Downstream genePpia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432G21.T7 (MSMg01no432_g21.b1)MSMg01-432G21.TJ (MSMg01no432_g21.g1)
ACCAG524450AG524451
length796777
length of high quality
(start - end)		365 (45 - 409)395 (73 - 467)
definitionCHROMAT_FILE: MSMg01no432_g21.b1 PHD_FILE: MSMg01no432_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:09 2005CHROMAT_FILE: MSMg01no432_g21.g1 PHD_FILE: MSMg01no432_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTTTTCCCCCAACCCACCCACACAGTTTCAGAGAATTGTACCTC
ACCCAAGGAAGAAACCCTCGGCATGATAAGGAAGTCGGACCCAGCTGTCC
CCAGTTCCCATGACCCTGGGGCTCCATAGCAGGAGCTCACAACATGACCC
AGGCATTCTTTCCCTTAGAATGATACGACCCTTGGCTGATGTGTTGTTAG
TGACATTGGTTTCATCATGATGTTTTTTTTTTTATTTAAGATTTATTTAT
TGGTTATGTGTAAGTACACTGTCACTGTCTTCAGACACTCCAGAAGAGGG
AGTCAGATCTCCTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT
TTGAACTCCGGACCTTCACAAGAGTAATCGGGTGCTCCTACCCACTGAGT
CATCTCACCAGTCCATGATGGGTCTTTTTCATCTTTCCCGAAAAAGCCTT
ACCGGGGTGTATTTGCTCTCTGGGTTCTTACCCTCATTTTTCCATTGATT
TTTTTTTGGTACCTTCTTTTTGCTTATTTATCTCGGTTTGTAGACCTCTC
CCTTCCCTATTTTCTCTTTTTCTTCTCTTCCCCCAATCTCATTTTTTTCA
CTATATTCTCTTCTCTCCCTAACTTCTCCTCGTTTCCGCTACTTTCCATT
ATTTTCTTCTATCCCTTCCAGCCCCTATACCTTACTCTCCACCATCCCCT
TTTTTCCACTTTCTTTTTCACACTCAATCACTTTTTCTGCTCCCTG

CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGAATGATGCTTTTTTATTAAGTCTG
CAAACTCAAGCAGTGATATTTAAGGGAAGTGTCTGACAGTGTGGTGCAAA
GGTGTGTTTGATACACGCTGGAGAGTGATAGGAAGAAACACTAGAAGTCT
TTGTTTCCTGATAACTGAGCTGTTATGGTTCTATAAATAACAGGAGGAAA
AGTGCCAGAGAGATGGCTCAGCGGTTAAGAACGTGTACTGCTCTGGTAGA
GAGCCCAAATTCAGGTTACAGCACTCATATACAGAGGCTCGCTCACGGCT
GCCTTGATCTCCAGCCAAAGAGGGATCCAAGAGCTCCGATCCTGCTATCT
CCAATCGCACATTTTTAAAAGTAATAAAAATTGGACCCCAATGGAAGAGC
TAGGGAAAGGACTGAAGGAGCTGAAGGCGATGGCAACCCATATGAAGAGC
AACATCCAGTAATTGGACCACCTATAGTTCCCAGGGACTAAACCACCAAC
CCATGAAGACACATTGTGGGGACCCCGTGGCTTCCGCTTGCGATGTAAAA
TAAAGAGCCTTATTTGGTTCCCTTGGGAGGAAAGTTCCCTTGTCCTTTTT
AGTTTTTTTCCCCCCCCTTTGTGAATGTCCTATGCTGTTTTGTTACTTAA
TCTCCCTTTTTTTTTTCCAGTTCTCCTCTTCCTTTTCTTTCTTCTCCTTT
CTTCTTCTTTTGTTTTTTATTCATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_g21.b1 MSMg01no432_g21.b1 CHROMAT_FILE:
MSMg01no432_g21.b1 PHD_FILE: MSMg01no432_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:09 2005
         (365 letters)



>mm_chr4_117483583_117484348
          Length = 766

 Score =  671 bits (347), Expect = 0.0
 Identities = 359/363 (98%), Gaps = 2/363 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttttt-cccccaacccacccacacagtttcagagaattgtacctcacccaag 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttttttccccccaacccacccacacagtttcagagaattgtacctcacccaag 264

                                                                       
Query: 64  gaagaaaccctcggcatgataaggaagtcggacccagctgtccccagttcccatgaccct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagaaaccctcggcatgataaggaagtcggacccagctgtccccagttcccatgaccct 324

                                                                       
Query: 124 ggggctccatagcaggagctcacaacatgacccaggcattctttcccttagaatgatacg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggctccatagcaggagctcacaacatgacccaggcattctttcccttagaatgatacg 384

                                                                       
Query: 184 acccttggctgatgtgttgttagtgacattggtttcatcatgatgttttttttttt-att 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 acccttggctgatgtgttgttagtgacattggtttcatcatgatgttttttttttttatt 444

                                                                       
Query: 243 taagatttatttattggttatgtgtaagtacactgtcactgtcttcagacactccagaag 302
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 taagatttatttattggttatatgtaagtacactgtcgctgtcttcagacactccagaag 504

                                                                       
Query: 303 agggagtcagatctccttacagatggttgtgagccaccatgtggttgctgggatttgaac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agggagtcagatctccttacagatggttgtgagccaccatgtggttgctgggatttgaac 564

              
Query: 363 tcc 365
           |||
Sbjct: 565 tcc 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 766
Length adjustment: 9
Effective length of query: 356
Effective length of database: 757
Effective search space:   269492
Effective search space used:   269492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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