Query= MSMg01no434_a18.b1 MSMg01no434_a18.b1 CHROMAT_FILE:
MSMg01no434_a18.b1 PHD_FILE: MSMg01no434_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:19 2005
(610 letters)
>mm_chr4_99227612_99228624
Length = 1013
Score = 837 bits (433), Expect = 0.0
Identities = 496/527 (94%), Gaps = 22/527 (4%)
Strand = Plus / Minus
Query: 5 gaattcacagactagctctggtgtgccataaatattcagtgttaatattctatgagttta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattcacagactagctctggtgtgccataaatattcagtgttaatattctatgagttta 466
Query: 65 tgtgtaaatacttaagagactataaatccattgtcccactgctcagaaaacagtagcatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgtgtaaatacttaagagactataaatccattgtcccactgctcagaaaacagtagcatt 406
Query: 125 gttagtaaggacggagaaatggaaacttggagggttttgggggtcgtgtttgccaggcgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gttagtaaggacggagaaatggaaacttggagggttttgggggtcgtgtttgccaggcgg 346
Query: 185 tgagggtgacaggcacctgcagaatggagagctggcaagggaggaaggtgcttagggaca 244
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct: 345 tgagggtgacaggcacctgcagaatggagagc-ggcaagggaggaaggtacttaggaaca 287
Query: 245 aagaagctctccccatcaatcgctgcatg----ctttccctcaggaggaacaggagcttg 300
||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 286 aagaagctctccctatcaatcgctgcatgctttctttccctcaggaggaacgggagcttg 227
Query: 301 cctcatcagtacagcctttctg-----------cccccacccc-caccca---ccaggag 345
|||||||||||||||||||||| ||||| |||| | |||| |||||||
Sbjct: 226 cctcatcagtacagcctttctgtcccgtcccccccccccccccgcccccagccccaggag 167
Query: 346 gagaggcgaaaacttttcttacacttaactgtgtccaaaactcagcttttctagtgtttg 405
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 166 gagaggtgaaaacttttcttacacgtaactgtgtccaaaactcagcttttctagtgtttg 107
Query: 406 tctaccgaagatgattcgcttcctatcagaaaacacacttcagcaaactcacgagtgaac 465
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tctactgaagatgattcgcttcctatcagaaaacacacttcagcaaactcacgagtgaac 47
Query: 466 tctaaaatcactgtctacttgtacagggaggacc-ttccctgataga 511
|||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 46 tctaaaatcactgtctacttgtacagggaggacccttcc-tgataga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1013
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1003
Effective search space: 601800
Effective search space used: 601800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_a18.g1 MSMg01no434_a18.g1 CHROMAT_FILE:
MSMg01no434_a18.g1 PHD_FILE: MSMg01no434_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:20 2005
(479 letters)
>mm_chr4_99010368_99011246
Length = 879
Score = 482 bits (249), Expect = e-140
Identities = 267/275 (97%), Gaps = 4/275 (1%)
Strand = Plus / Plus
Query: 205 cagtggtcagcatcagtggcgcctgagcgcttcgaccgtctctctgctgatgcagttaga 264
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 249 cagtggtcagcatcagtggcgcctgagcgcttcgaccggctctctgctgatgcagttaga 308
Query: 265 tccctttctagagactgtttcaaccccttacttacttcccagaagtaaaaaataggtaag 324
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 309 tccctttctagagactgtttcaaccccttactt----cccagaagtaaaaaataggtaag 364
Query: 325 aggggcttccgctgggtctccaggtctcagttggcacggtctgggactcaccctcctgac 384
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 365 aggggcttccgctgggtctccaggtctcagttggcacggtctggggctcaccctcctgac 424
Query: 385 tcatcccgtcttcaccgcgttgatccggttccctccacagctgagcgaggcagcagaaag 444
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcaccccgtcttcaccgcgttgatccggttccctccacagctgagcgaggcagcagaaag 484
Query: 445 gaccgggtctgttcaccgagcatgtttgccgtggc 479
||| |||||||||||||||||||||||||||||||
Sbjct: 485 gactgggtctgttcaccgagcatgtttgccgtggc 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
