Query= MSMg01no434_i12.b1 MSMg01no434_i12.b1 CHROMAT_FILE:
MSMg01no434_i12.b1 PHD_FILE: MSMg01no434_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:58 2005
(474 letters)
>mm_chr4_114743045_114743920
Length = 876
Score = 870 bits (450), Expect = 0.0
Identities = 466/472 (98%), Gaps = 2/472 (0%)
Strand = Plus / Minus
Query: 5 gaattcagggtctttctcagatcttacaaagaccaaaaccctggctcttccctgcccagc 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaattcagggtcttccttagatcttacaaagaccaaaaccctggctcttccctgcccagc 617
Query: 65 ccctttagaaactttcgaaatctctcaccccttctcactcctgtttcttgccttggaatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ccctttagaaactttcgaaatctctcaccccttctcactcctgtttcttgccttggaatc 557
Query: 125 agggagaaattaagattaatcttgagaaattagcatctacataactcaatggaaaatatt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggggagaaattaagattaatcttgagaaattagcatctacataactcaatggaaaatatt 497
Query: 185 ttataatccaaatgacacaaacacatcaactgcccaggcctgaactctggctggaacctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttataatccaaatgacacaaacacatcaactgcccaggcctgaactctggctggaacctc 437
Query: 245 acggcacggtcagtactaagggttatgaagcttcttttgtgcctgtgctgggtgtagaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acggcacggtcagtactaagggttatgaagcttcttttgtgcctgtgctgggtgtagaac 377
Query: 305 acagaaccccgtgtgtgcaatccccg--ccccccccccccgcaatgcaccggccctctgt 362
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 376 acagaaccccgtgtgtgcaatccccgccccccccccccccgcgatgcaccggccctctgt 317
Query: 363 gctccagagcagtctttacggacccaatggacttccaatgttatgatcacagtccgtcca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gctccagagcagtctttacggacccaatggacttccaatgttatgatcacagtccgtcca 257
Query: 423 ccgcctagcgtgtttatcccagtgaagctgcaaagctgatgtagggaactgc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ccgcctagcgtgtttatcccagtgaagctgcaaagctgatgtagggaactgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 876
Length adjustment: 10
Effective length of query: 464
Effective length of database: 866
Effective search space: 401824
Effective search space used: 401824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_i12.g1 MSMg01no434_i12.g1 CHROMAT_FILE:
MSMg01no434_i12.g1 PHD_FILE: MSMg01no434_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:58 2005
(428 letters)
>mm_chr4_114574078_114574905
Length = 828
Score = 764 bits (395), Expect = 0.0
Identities = 420/435 (96%), Gaps = 14/435 (3%)
Strand = Plus / Plus
Query: 1 ttctctccagtcccaagcaagattcatggaaccccaattccaaagatatttcagccct-a 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 201 ttctctccagtcccaagcaagattcatggaaccccaattccaaagatatttcagcc-tca 259
Query: 60 atagacaaaagtaacccagggtgagccaaccctgagacaatttccaccttccgaggaaac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atagacaaaagtaacccagggtgagccaaccctgagacaatttccaccttccgaggaaac 319
Query: 120 tgagcagaccctgctgttgctgaaactcgcagaaccccaacatccgagaccgagtgcatc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgagcagaccctgctgttgctgaaactcgcagaaccccaacatccgagaccgagtgcatc 379
Query: 180 cttcccagttgtgcacacagccgagtctagtgcgggtttaccgagattctagggtctacg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttcccagttgtgcacacagccgagtctagtgcgggtttaccgagattctagggtctacg 439
Query: 240 aaagattgttttttg------atagaagggtgatgaagactcccaccgacggagttcctc 293
|||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaagattg------ggcagggatagaagggtgatgaagactcccaccgacggagttcctc 493
Query: 294 tcggaccacgaaatttagaccaacaatgagaagggaaagtgaacatggagaaatgtttac 353
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 494 tcggaccacgaaatttagaccaacaatgagaagggaaagtgaacatggagaaaggtttac 553
Query: 354 cgggaggaaaacccagctgatggagaaacgcgcggagcagcgactgcgagccatttctgc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cgggaggaaaacccagctgatggagaaacgcgcggagcagcgactgcgagccatttctgc 613
Query: 414 tcgagtccgcgtgga 428
|||||||||||||||
Sbjct: 614 tcgagtccgcgtgga 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
