Query= MSMg01no434_j16.b1 MSMg01no434_j16.b1 CHROMAT_FILE:
MSMg01no434_j16.b1 PHD_FILE: MSMg01no434_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:04 2005
(249 letters)
>mm_chr4_108063960_108064608
Length = 649
Score = 387 bits (200), Expect = e-112
Identities = 227/240 (94%), Gaps = 10/240 (4%)
Strand = Plus / Plus
Query: 4 catctttatcctcttctgtggcttcttcttgttaatatacaaatgtggaggctgctacaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 catctttatcctcttctgtggcttcttcttgttaatatacaaatgtggaggctgctacaa 263
Query: 64 caccggtgaacagactcgtaaaaccaggaagcagcaggaagaaagaggtagaggttggag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caccggtgaacagactcgtaaaaccaggaagcagcaggaagaaagaggtagaggttggag 323
Query: 124 tataggtgactgcctcctcaatctctctctctctctctctctctctctctctctctctct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tataggtgactgcctcctcaatctctctctctctctctctctctctctctctctctctct 383
Query: 184 ctctctctctctctctctctctctctctcccctctctctttct--ctcccctcttccttc 241
||||||||||||||| | ||||||||||||| || |||| || ||||| |||||
Sbjct: 384 ctctctctctctctccc-----ctctctcccctct-tccttctacctaccctc--ccttc 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no434_j16.g1 MSMg01no434_j16.g1 CHROMAT_FILE:
MSMg01no434_j16.g1 PHD_FILE: MSMg01no434_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:04 2005
(488 letters)
>mm_chr4_108194111_108194997
Length = 887
Score = 818 bits (423), Expect = 0.0
Identities = 429/431 (99%), Gaps = 1/431 (0%)
Strand = Plus / Minus
Query: 58 aattcactagatataaaccctgttacaattgttccttctcattctccaataacactctct 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 aattcactagatataaaccctgttacaattgttccttctcattctccaataacactctct 828
Query: 118 caaacaaataatttacaagtttaagtacacatttaaatttatgtatttattagtggaggc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 caaacaaataatttacaagtttaagtacacatttaaatttatgtatttattagtggaggc 768
Query: 178 atgcaatatgcacatctagatagaagacaacttgtctgggttggatgtctttgtttacta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 atgcaatatgcacatctagatagaagacaacttgtctgggttggatgtctttgtttacta 708
Query: 238 tgtaggtcccagagtctgaactcagattgtcatacttggtggcaagtgccttcacctgct 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgtaggtcccagagactgaactcagattgtcatacttggtggcaagtgccttcacctgct 648
Query: 298 aagccatctcactggcctttaattatatagttagacaataaatttcatgctctgaaaaaa 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 647 aagccatctcactggcctttaattatatagttagacaataaatttcatgctctg-aaaaa 589
Query: 358 aaatcattccatgtaatactgattaaatttcaatgataatgaagaaagataaaagaaact 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aaatcattccatgtaatactgattaaatttcaatgataatgaagaaagataaaagaaact 529
Query: 418 aaagggctcagcagttcagcagcacatataacaacactaaaacaatatagagattagcaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aaagggctcagcagttcagcagcacatataacaacactaaaacaatatagagattagcaa 469
Query: 478 ggcctctatgc 488
|||||||||||
Sbjct: 468 ggcctctatgc 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space: 419206
Effective search space used: 419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
