NCGCAAAACACNCACATATTTCAAGAACCGCGNAAATCTCCTNGAATATT
CTCCCTTAACTAANCTGCTCTGAAGNGCTAACTTAAAAACATAGTCTATA
AAAAACCNNNACCNNCCANACAAAACACATCAATAACTNACNTTTTCTTA
AAGAAACAAAAAAGCCGAGCTCGCAAAGGGGGGAAGGGGGGTTTTTGTTT
GTAGCTGTGAAGAAGGGGAGGCAGACGGGCGGGTGGGGGGAGAAACGGGG
GTGGGGAAAACTAAACNCCNNNNNNAAANNAACCCCAANAAAAATTACTC
AAAAAAAAAAGACTAAAAAAGAAAAAAATAACTAAAGAAAAATGATACAA
AAANCTNNNNNNNNNNNNNAAAAAAAANNAAAATAAACCCCCCTGGGNNN
NNNAAAANAAGAGAGGGGGGGGGGGGGGGGGGGCTGGGGGGGGGGGGGAG
GGAGAGAAGGGGCTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANAAAAGTATAGAT
AAAAATAGGGGGGGGCTGGNNNNNNNNNNNNNNNNNNNNNNNNNAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNANNNNNANANNNNNANNNNANNNNNNNNNAAAAANANNAAAA
AAAATATTTAAATTTTAATTAAATATATATG

NNNCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAAGTGCTGGCATCATG
ATCTCCATCACAAAGAGCAAGTCTCTGCTCTGCAAACTGGGAGTGGCATT
GTACTCTCTGTGGGAGGGTGAGAGGCTTAAAGGTCACAGCTGTGCTTTCA
AGGGTGTTATCAGCCCAACTCTGGGGGAATTGTGGGTATAGGACTAGGAG
GTGAAGTGCCTGAAACTTAAAATGGTGTAGCACTGGGAAACCACACACAC
ACACACACACACACACACACACACACACACACACTCTCACCCCACCCCCT
GCCCTGCCCCAACATGCAAGTCCCTTGGGATTTTAAACATAGAATTACCA
TGTGATACACCAATTGACTTCTCTGTATAGACTTGAAATAACTGAAACCA
CAGGCATGAATAGGTACTTGCATGTCTAATAGCAGCATTATCCCCTACTG
CTGGAAGCAGAAAAATGTCCCTCCCGGGTGAAAAAAGGGTAAACAAAAAA
TTTTCTCCCTTCTTTCCCCCAAAAAAATAAACCCCCCCGAAAAAAAAGGA
AGGCGTCGTATTNATNTNNTNTATTTCTCCCTTCACATCTTATCACTTCC
TTCCTCCCTCCTCCTATCTC

Query= MSMg01no434_k22.g1 MSMg01no434_k22.g1 CHROMAT_FILE:
MSMg01no434_k22.g1 PHD_FILE: MSMg01no434_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:10 2005
         (385 letters)



>mm_chr4_85829385_85830169
          Length = 785

 Score =  601 bits (311), Expect = e-176
 Identities = 351/385 (91%), Gaps = 32/385 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagaagtgctggcatcatgatctccatcacaaagagcaagtctctgctctgcaaactgg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 411 ccagaagtgctggcatcatgatctccatcacaaagagcaagcctctgctctgcaaactgg 352

                                                                       
Query: 61  gagtggcattgtactctctgtgggagggtgagaggcttaaaggtcacagctgtgctttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gagtggcattgtactctctgtgggagggtgagaggcttaaaggtcacagctgtgctttca 292

                                                                       
Query: 121 agggtgttatcagcccaactctgggggaattgtgggtataggactaggaggtgaagtgcc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agggtgttatcagtccaactctgggggaattgtgggtataggactaggaggtgaagtgcc 232

                                                                       
Query: 181 tgaaacttaaaatggtgtagcactgggaaaccacacacacacacacacacacacacacac 240
           |||||||||||||||||||||||||||||||||||||||||||||               
Sbjct: 231 tgaaacttaaaatggtgtagcactgggaaaccacacacacacaca--------------- 187

                                                                       
Query: 241 acacacacacacactctcaccccaccccctgccctgccccaacatgcaagtcccttggga 300
                            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 -----------------caccccaccccctgccctgccccaacatgcaagtcccttggga 144

                                                                       
Query: 301 ttttaaacatagaattaccatgtgatacaccaattgacttctctgtatagacttgaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ttttaaacatagaattaccatgtgatacaccaattgacttctctgtatagacttgaaata 84

                                    
Query: 361 actgaaaccacaggcatgaataggt 385
           |||||||||||||||||||||||||
Sbjct: 83  actgaaaccacaggcatgaataggt 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)