BAC Information

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BAC

Clone NameMSMg01-434M03
Chromosome4 (Build37)
Map Location 122,535,312 - 122,535,561
singlet/doubletsinglet
Overlap genePpt1
Upstream geneLOC666931, LOC666937, LOC633269, LOC633279, 9530002B09Rik
Downstream geneCap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434M03.T7 (MSMg01no434_m03.b1)MSMg01-434M03.TJ (MSMg01no434_m03.g1)
ACCAG526223AG526224
length739733
length of high quality
(start - end)
493 (36 - 528)250 (68 - 317)
definitionCHROMAT_FILE: MSMg01no434_m03.b1 PHD_FILE: MSMg01no434_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:16 2005CHROMAT_FILE: MSMg01no434_m03.g1 PHD_FILE: MSMg01no434_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGGG
ATTTTCCACAGATAACATAAATGCTAGGGCCCTGAGAGGCAGGCTGGGTT
GCTTGTTAGTGTTGATTGCATCCCGGTGCATAGAAGAAATAACAAGAAAG
ATTAGATATCTTTTTTCATTCAATAAGTATTTTTTTCGTTTTTAAAAAAA
TGTTATTTTATTCATTTACATTTCAAATGTTTTCTCCCCTTCCCAGTTTT
CCCTGTGCAAACCTCCTATCCCCTCCCCCCTGCTTCTATGAGGGTACTCC
ATACCTACCCACCCACTCCTACCTCACTGCCCTAGCATTGCCCTATGCTG
AGGCATCAAGCCTTCACAGGACCAAGGGCCTCCCCTCTCACTGATGCCAG
ATAAAGCCATCCTCTGCTACATATGGAGCTGAAGCCATGGGTCCCTCTAT
GTGTATTCTTTGGTTGGTGGTTAGTCCCTGGGAGCTCTGGATGGTCTGGT
TGGCTGATATTGTTGTTCCTCCTTCGGCAGAGTTGTAAAAAAAGATGAAA
ATCATACTGTCCCCAGGGAATTCTGCTCCCCTACATCTTCTGTAGGAATT
AGCCTATTCCTAATATCTCCTTTTTTCCTCTGGTATGGTATATTCCCTCA
TTTCTAAAGTTTATTTTTTTTTTTAGCAGGTGCTTAAGCATTATACAATA
TTTTATATCTTTTGCCAACAAGGCCCTAATTATCCGGCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGCCAGCTAGGGTTACAAAGTGAGTGAAACC
CTGTCTCAAAGAAGAGAAGAGAAGAGAAGGTACATTTCCTTTCCTAAGCA
ACCCTGCTGGCAGTTCCCCCCTGTGTGACTAATTCTGTTACTGAGGATTA
AGGATACAAGGTGAGCTCTGAAGGGGACGTGATGGTAGGCTTGTGGGGTG
ACTGCTAGGTACCTCTAGAGGGCAACACTTACACAGGAAAACAGTCTTAA
GAAATGATGGGGAAACATCTTGTACGGCCCACACAGCAGTGCAGAGAAAT
TGCTTGTGTTAACATCTCAGACCTGGGCTTTTATTTGCTCCAAATTTGTA
TGGGTTTTGCCCTCAGAGCTTGTCTCTTTTTCACTTCTGTCTCTTTTAGG
CACAATTACTGATCTGCAACAACAGACTCCCATTTCTTAAACGGGAGCTT
GACCATATCACAAAGTTGTAAAACAATCTCCATGGTTATTAGCTAATTAA
ACTTGAATCCAACACCATATGGTGATAGCAGGCGGCAAAGGATAAGATTG
AGATCTTAGATCTTTTCCTAGTAGGGTATGTTAGATGATAAGAGGAGAGA
AAGTCTGTTTTTTTTTATCTTTTACTCCTCGTCTTTTATTCTCCCTCCAG
TGTTCCCCTCTGTATTTCGTTCGAATTTGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_m03.g1 MSMg01no434_m03.g1 CHROMAT_FILE:
MSMg01no434_m03.g1 PHD_FILE: MSMg01no434_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:16 2005
         (250 letters)



>mm_chr4_122535047_122535696
          Length = 650

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagctagggttacaaagtgagtgaaaccctgtctcaaagaagagaagagaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 caggccagctagggttacaaagtgagtgaaaccctgtctcaaagaagagaagagaagaga 456

                                                                       
Query: 61  aggtacatttcctttcctaagcaaccctgctggcagttcccccctgtgtgactaattctg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aggtccatttcctttcctaagcaaccctgctggcagttcccccctgtgtgactaattctg 396

                                                                       
Query: 121 ttactgaggattaaggatacaaggtgagctctgaaggggacgtgatggtaggcttgtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttactgaggattaaggatacaaggtgagctctgaaggggacgtgatggtaggcttgtggg 336

                                                                       
Query: 181 gtgactgctaggtacctctagagggcaacacttacacaggaaaacagtcttaagaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtgactgctaggtacctctagagggcaacacttacacaggaaaacagtcttaagaaatga 276

                     
Query: 241 tggggaaaca 250
           ||||||||||
Sbjct: 275 tggggaaaca 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)