BAC Information

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BAC

Clone NameMSMg01-434N22
Chromosome4 (Build37)
Map Location 128,988,689 - 128,989,343
singlet/doubletsinglet
Overlap geneRbbp4
Upstream geneZscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync
Downstream geneZbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434N22.T7 (MSMg01no434_n22.b1)MSMg01-434N22.TJ (MSMg01no434_n22.g1)
ACCAG526308AG526309
length751753
length of high quality
(start - end)		503 (38 - 540)428 (70 - 497)
definitionCHROMAT_FILE: MSMg01no434_n22.b1 PHD_FILE: MSMg01no434_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:24 2005CHROMAT_FILE: MSMg01no434_n22.g1 PHD_FILE: MSMg01no434_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
CTATTCTTCACTTGCTATAAAATTTGGAGGTCTTGCAAGAAACTTCTTCA
CTTGGTTTGAAAATGTTCTGATTCCACAGAACAAGAGCTTTTGACATTTA
TGTATTGTGCACGTACAAATCCCTCTTGGTTCAGTTTCTCCAAGAACTAG
GAATACAGGGCTACCATACATACACCTTGTTTATTATATTGGAATATAAC
TGAGAGACCAAATGAAAGAGATAAATACAATAGGGAGCAGACAGGGATTG
CCTTACTAACGGGTCTCGGCACGACCACAAGGGAGCATCATCACCAACAG
GACACACTGAGCTGGAAATCCCATTGCTTTCTTGGCAGTCCTATGCCAAT
AATAGAACACAGCCTAAGCATGTACTCCTTCTTATTCGGATAGAACCCAC
AATGGAACAGTAAGCCTGGAAGGATCTAGTTTACCCCATAACCTTTTCTC
TTCCTCTGAGACAGGGTTTCTCTGTGTAACCCTGGCTGCCCTCAAACCCA
GAGATTCCAAATGCCTCTGCTTCCCGGGTGCTACTGGGACGAAAGGTGTG
CACCACTGTGGGAAGCCACATGTGTCTTTGCAAGGTGGCGGTGGCTTCTG
CTTGTCCCCCCCCTTTCTTAAGCGGTTAGGTTTTTTTTTTTTTTTTTCCA
TAATTGGTTTTTATAATATCCACTATTTTTTTTTCTTAAGTAATAATATT
G

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCATAGTGACACACTATTGGCTAATTCAAA
CATCAGCAGAAAGATTACATGTCAGCAAAAGAATACGTGCAGGTCAGGTG
TCAGAGTTCTGTGAGTTGTTGACTCAGTTCAGATAGTCCTGTTATGTCCT
CACATTCCTCTTTATCTTTATGGTCAAGCTGTTCCCAGGAATGCTTTACG
GATGGGGCATGCCCGGGTTTGTTTTTCTTTGTTCTCAGCCCCAGGCAGCC
TCTAGGCTCACAAACAACCAGCAATTCTGAGTACTTTATATGACTTACAG
GTCTTGAAATTTCATCTTTCTTTCACTTGCTGACAGCCCTTAAGACTGGG
TTCAATCTCAGCAACATACATGGTAGGAGAGTACCAACTTTCACAGGTTG
TCCTCTGACCTTCACACGAATACTGTGGCACATATGCCCTCCAGTCTCCC
CTACATAAACACACACACACACGACATGTCTGAACTTTTTCCCCTTAAAT
ATTTTTTAGTCGCGGNTAATTCCATGCATGGGTGTAGAACTTGCTGCTAC
CGAAAGCTGACTACAGTTGGCCAAAATTGCAATGGTCAATAAGTGAAGAA
GGGGGATAGGTTGTTTTCNNCCNNTCCCNTCTCTCNCTCTTTCATCCTTA
CAATACTTTTTCCTCGAATCTCTTCTGTACTTCTTTTTTATTCTTCCTCT
ATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_n22.b1 MSMg01no434_n22.b1 CHROMAT_FILE:
MSMg01no434_n22.b1 PHD_FILE: MSMg01no434_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:24 2005
         (503 letters)



>mm_chr4_128988641_128989543
          Length = 903

 Score =  611 bits (316), Expect = e-179
 Identities = 493/656 (75%), Gaps = 158/656 (24%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctattcttcacttgctataaaatttggaggtcttgcaagaaacttcttcac 64
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  gaattctttctattcatca-ttgctataaaatttggaggtcttgcaagaaacttcttcac 107

                                                                       
Query: 65  ttggtttgaaaatgttctgattccacagaacaagagcttttgacatttatgtattgtgca 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 108 ttggtttgaaaatgttctgattccacagaacaagagattttgacatttatgtattgtgcg 167

                                                                       
Query: 125 cgtacaaatccctcttggttcagtttctccaagaactaggaatacagggctaccatacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cgtacaaatccctcttggttcagtttctccaagaactaggaatacagggctaccatacat 227

                                                                       
Query: 185 acaccttgtttattatattggaatataactgagagaccaaatgaaagagataaatacaat 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 228 acaccttgtttattatattgggatataactgagagaccaaatgaaagagataaatacaat 287

                                                                       
Query: 245 agggagcagacaggg--------------------------------------------- 259
           |||||||||||||||                                             
Sbjct: 288 agggagcagacagggttgcttctcacgctgctttccaagcaaatcagtgtgaacacagaa 347

                                                                       
Query: 259 ------------------------------------------------------------ 259
                                                                       
Sbjct: 348 ctctagaagctcaaacttctcccatccccacaggggaggctgagagttccaaatgtttgt 407

                                                                       
Query: 260 ----------------------------------------------------attgcctt 267
                                                               ||||||||
Sbjct: 408 cagcaattttgctgactagcccaactgcaaggctacctagagttccaccaaaattgcctt 467

                                                                       
Query: 268 actaacgggtctcggcacgaccacaagggagcatcatcaccaacaggacacactgagctg 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 actaacgggtctcggcacgaccacaagggagcatcatcaccaacaggacacactgagctg 527

                                                                       
Query: 328 gaaatcccattgctttcttggcagtcctatgccaataatagaacacagcctaagcatgta 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaaatcccattgctttcttggcagtcctatgccaataatagaacacagcctaagcatgta 587

                                                                       
Query: 388 ctccttcttattcggatagaacccacaatggaacagtaagcctggaaggatctagtttac 447
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctccttcttatccggatagaacccacaatggaacagtaagcctggaaggatctagtttac 647

                                                                   
Query: 448 cccataaccttttctcttcctctgagacagggtttctctgtgtaaccctggctgcc 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cccataaccttttctcttcctctgagacagggtttctctgtgtaaccctggctgcc 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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