Query= MSMg01no435_f22.b1 MSMg01no435_f22.b1 CHROMAT_FILE:
MSMg01no435_f22.b1 PHD_FILE: MSMg01no435_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:04 2005
(297 letters)
>mm_chr4_127696014_127696710
Length = 697
Score = 520 bits (269), Expect = e-152
Identities = 290/297 (97%)
Strand = Plus / Minus
Query: 1 cacacacacacacacacacacacacacacacacatacacactcacacactcacacacaca 60
|||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct: 563 cacacacacacacacacacacacacacacacacacacacactcactcacacacacacaca 504
Query: 61 cacacaacagggtggcttcagggaaggcatctatctttcatcacacagctctttagtacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cacacaacagggtggcttcagggaaggcatctatctttcatcacacagctctttagtacc 444
Query: 121 cagccacacaccaagtacttttatcctggaccccagctgttttttggaagaatctttgag 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 443 cagccacacaccaagtacttttatcctggaccccagttgttttttggaagaatctttgag 384
Query: 181 aaaactgggtatctctctattcatgactatgtttgtaagagactttgtatctcagcagcg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 aaaactgggtatctctctattcatgactatgtttgtaagagactttgtatctcagcagtg 324
Query: 241 aaattgcgcatgtgtgagcttatgtgctattcagaagcttatctgcttatgtgtgct 297
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 aaattgcgcatgcgtgagcttatgtgctatacagaagcttatctgcttatgtgtgct 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_f22.g1 MSMg01no435_f22.g1 CHROMAT_FILE:
MSMg01no435_f22.g1 PHD_FILE: MSMg01no435_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:04 2005
(451 letters)
>mm_chr4_127525533_127526379
Length = 847
Score = 704 bits (364), Expect = 0.0
Identities = 438/478 (91%), Gaps = 32/478 (6%)
Strand = Plus / Plus
Query: 1 aggcagcctgtggttctttggggacttctctggacattaagttctctctcaacagtcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aggcagcctgtggttctttggggacttctctggacattaagttctctctcaacagtcaga 234
Query: 61 gaattgtgcaactgtgcttaagcaattaccagtggtttgtcatggtgggc---tgggtgc 117
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 235 gaattgtgcaactgtgcttaagcaattaccagtggtttgtcatgg-gggcgggggggtgc 293
Query: 118 gagggaagaggcttgaggaagggcatgaagatcagagttgaaggtgcagtggacccagag 177
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 294 gagggaagaggcttgagaaagggcatgaagttcagagtcgaaggtgcagtggacccagag 353
Query: 178 ggaccca--ggga--------gacccagagggacccaggtatctggaagcacaggaaacc 227
||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ggacccagggggacccagagggacccagagggacccaggtatctggaagcacaggaaacc 413
Query: 228 aaagcacaggtcaaagctgt----------at----gggcctctgtgttgactcctactt 273
|||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct: 414 aaagcacaggtcaaagctgtgaacccaaagatgtaggggcctctatgctgactcctactt 473
Query: 274 tgctcatcccttctccctccttctttccaacaacaccgtgagagttcacacccactcagc 333
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 474 tgctcatcccttctccctccttctttccaacaacactgtgagagttcacacccactcagc 533
Query: 334 accattttcacaggagtctcaacaaggaaaaccaggaaagagaagagattttctttgctt 393
||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 534 accattttcacaggagtctcaacaaggaaaaccaggaaa-ag--g-gattttctttgctt 589
Query: 394 ttggatcaaaaaatagaggcatgaagaagaagaccatggatgtaatttttgaagacag 451
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttggatcaaaaaacagaggcatgaagaagaagaccatggatgtaatttttgaagacag 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 847
Length adjustment: 10
Effective length of query: 441
Effective length of database: 837
Effective search space: 369117
Effective search space used: 369117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
