BAC Information

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BAC

Clone NameMSMg01-435K01
Chromosome4 (Build37)
Map Location 119,561,449 - 119,737,783
singlet/doubletdoublet
Overlap geneHivep3
Upstream geneOlfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneEdn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435K01.T7 (MSMg01no435_k01.b1)MSMg01-435K01.TJ (MSMg01no435_k01.g1)
ACCAG526888AG526889
length763773
length of high quality
(start - end)
427 (72 - 498)385 (78 - 462)
definitionCHROMAT_FILE: MSMg01no435_k01.b1 PHD_FILE: MSMg01no435_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:26 2005CHROMAT_FILE: MSMg01no435_k01.g1 PHD_FILE: MSMg01no435_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,737,357 - 119,737,783)(119,561,449 - 119,561,833)
sequence
CCCCGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGACTTTCCCTGTCAGAGGTCAGGGAAGGCAAGGACAGGT
GATGGCCACTCTCCAGACAGGAGTTTTTAAGAGAAGAACACAGTCAGCTA
AAATGGCAGTTGGCAAACCAGACTGGAGCTTCTTACCTGCGCTGCAGGCA
CCACTTCCGATGACCAAAACTGAAGCGCTGCTCTCTCTGGAAGCCAGCGT
TCATGTCCACTCCGGCCGCAAAGCCTCTGCTTACACACTGCTTCTCCCTG
AGGAAGGGGTAGCGTGCCTGGTCAGCGGCTCTCCAGAGTCTTCCATGAGC
TACTTCGAGGCAGCTTGGTTTGTGCCTCTGATCCTACGCGAGTGGGGAAG
ACGGAAGCCATGGTCAGGGAGTTTTCTAGATCAATTTTAGGTACAGAACA
ATCCCTGCTTTATCCCAGCCCTGAACTCTTTCCAAATTGCATTTCTGTCC
CATGTCCCCTTAGGCAGACAGTACGATATAGTGCTTCTGGCATGACACTC
TGTACATTCCTTTTACCTTATGCCAAACTTCCCCTGAACCGGCCTCCCTT
ACTCACCATTATGTCTTCCCTCCTCTTGTTCGTACCCCTTTGCCTTCCCA
CCCTTTGCAACCCCTTCCTTTTTTTTTCCTTTTCCCACTTTCTTTTTTAC
CCCGGTTTCTATGCCATTCTCGCTTTTTTCACCTTTTCCCCTTATATTCC
CCCTTTTCGCCCN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGTGTTCCACTACACAATG
GGAAATAATCTCCAAGACCCAAGAGCGGGCCAGTGAACAGGAGACAAAGG
ACAGCAGCGACCCTCCAGCGTGGCTGTGGTCCCTCCAGTCTCTCTCTGCA
TACACTGCCTTTCTGTCCAGTGCTGTCAAACCATTGTGGCATTCTGTTCA
TAGGATGTGGGGGAAGGACCAGCTCTTATAGCTCCCACTTTTGTTTGCCC
AGAACTCAACTGCAGTGTAAAGTCTCACAGAAGGGACTCTGGGCATCTGT
CTTTGGGTGAGGGCGTCTGGGTCCTCCAACCTAAGCTACACCGTCCCTGC
CATGCTGCACAAGGCAGAGATTGGCTGTCCTGAGCCCTACATTTTACTAA
CACACAGAATTGGGATGGATAAGGCGGCAGCCATTTTAACGTATTCCGTG
CTATACCGTCGTTTATATCTGTCCCCTCTTGGTATGTTATCCCCCTTATT
TTCCCTATTATCCGCCTTTTTTTATTGTTTTCTTCCTCTTGTCGTTATCC
ACACCCCCTAAACATTTTTATTATCTCTTTCTTTTCCCCCTTTCTCTATT
CTATTTTTTATTCTGTTCGACTACCCTCAATGTGTCCCCTTTTTTTCCAT
TATTCTATATTATTATTCTCCCCCCCCACCTTTTTATTTCTTCTCTCACC
GCTACCCTTATTAGTGCAACGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_k01.b1 MSMg01no435_k01.b1 CHROMAT_FILE:
MSMg01no435_k01.b1 PHD_FILE: MSMg01no435_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:26 2005
         (427 letters)



>mm_chr4_119737157_119737983
          Length = 827

 Score =  764 bits (395), Expect = 0.0
 Identities = 419/427 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcagaggtcagggaaggcaaggacaggtgatggccactctccagacaggagtttttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 627 gtcagaggtcagggaaggcaaggacaggtgatggccactctccagacagaaggttttaag 568

                                                                       
Query: 61  agaagaacacagtcagctaaaatggcagttggcaaaccagactggagcttcttacctgcg 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agaagaacacagccagctaaaatggcagttggcaaaccagactggagcttcttacctgcg 508

                                                                       
Query: 121 ctgcaggcaccacttccgatgaccaaaactgaagcgctgctctctctggaagccagcgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctgcaggcaccacttccgatgaccaaaactgaagcgctgctctctctggaagccagcgtt 448

                                                                       
Query: 181 catgtccactccggccgcaaagcctctgcttacacactgcttctccctgaggaaggggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catgtccactccggccgcaaagcctctgcttacacactgcttctccctgaggaaggggta 388

                                                                       
Query: 241 gcgtgcctggtcagcggctctccagagtcttccatgagctacttcgaggcagcttggttt 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcgtgcctggccagcggctctccagagtcttccatgagctacttcgaggcagcttggttt 328

                                                                       
Query: 301 gtgcctctgatcctacgcgagtggggaagacggaagccatggtcagggagttttctagat 360
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtgcctctgatcctacaaaagtggggaagacggaagccatggtcagggagttttctagat 268

                                                                       
Query: 361 caattttaggtacagaacaatccctgctttatcccagccctgaactctttccaaattgca 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 267 caattttaggtacagaacaatccctgctttatcccagccctgaactctctccaaattgca 208

                  
Query: 421 tttctgt 427
           |||||||
Sbjct: 207 tttctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no435_k01.g1 MSMg01no435_k01.g1 CHROMAT_FILE:
MSMg01no435_k01.g1 PHD_FILE: MSMg01no435_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:27 2005
         (385 letters)



>mm_chr4_119561249_119562033
          Length = 785

 Score =  745 bits (385), Expect = 0.0
 Identities = 385/385 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctgtgttccactacacaatgggaaataatctccaagacccaagagcgggccagtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgtgttccactacacaatgggaaataatctccaagacccaagagcgggccagtgaa 260

                                                                       
Query: 61  caggagacaaaggacagcagcgaccctccagcgtggctgtggtccctccagtctctctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggagacaaaggacagcagcgaccctccagcgtggctgtggtccctccagtctctctct 320

                                                                       
Query: 121 gcatacactgcctttctgtccagtgctgtcaaaccattgtggcattctgttcataggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatacactgcctttctgtccagtgctgtcaaaccattgtggcattctgttcataggatg 380

                                                                       
Query: 181 tgggggaaggaccagctcttatagctcccacttttgtttgcccagaactcaactgcagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggggaaggaccagctcttatagctcccacttttgtttgcccagaactcaactgcagtg 440

                                                                       
Query: 241 taaagtctcacagaagggactctgggcatctgtctttgggtgagggcgtctgggtcctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagtctcacagaagggactctgggcatctgtctttgggtgagggcgtctgggtcctcc 500

                                                                       
Query: 301 aacctaagctacaccgtccctgccatgctgcacaaggcagagattggctgtcctgagccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacctaagctacaccgtccctgccatgctgcacaaggcagagattggctgtcctgagccc 560

                                    
Query: 361 tacattttactaacacacagaattg 385
           |||||||||||||||||||||||||
Sbjct: 561 tacattttactaacacacagaattg 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)