BAC Information

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BAC

Clone NameMSMg01-435K06
Chromosome4 (Build37)
Map Location 63,160,445 - 63,160,741
singlet/doubletsinglet
Overlap genenone
Upstream geneHdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn
Downstream geneAtp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435K06.T7 (MSMg01no435_k06.b1)MSMg01-435K06.TJ (MSMg01no435_k06.g1)
ACCAG526898AG526899
length871795
length of high quality
(start - end)
96 (42 - 137)297 (77 - 373)
definitionCHROMAT_FILE: MSMg01no435_k06.b1 PHD_FILE: MSMg01no435_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:27 2005CHROMAT_FILE: MSMg01no435_k06.g1 PHD_FILE: MSMg01no435_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAAATTTGTGGCGCTAAACGACTCACTATTTCTAGAAATCCGCGGAAT
TCCTGATTTTTCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAA
TGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTCTGTCTTTGAGTT
TGTTTATATAACGGATTACATTGATGCATTTTCGCATATTAAACCATCCC
TGTATCCCTGCAATAATACCTATTTGTTCCTGATGGATGATTGTTTTTTT
GTGTTCCTGCATTCCTTTTTCGTTCATTTTATCGATCCTCCTTCGCCTCT
ACACTTTCACTATTTTTTTTTTCCGACCCATTTTTTTTCCCCTTTTTACT
TACTTCTTTCCTTATTCCCTCTCTCTCTTTCCATCCTCTTCATTTCTACT
TCCTCTTCTTTTTCTTTCCCTCCCATACCCTTTTTCCTCTTTTTACTTCC
TTACCTCTTCCTTCTTCTCTCCCTTTCTTCTCATTTTCCCTCCTTTCTCC
TTTTTTTCCTTTTTTTTTTTTTTCCCCCTCCTTCTCCATCTTCCTTTTCT
CCTCTCTCCCTCCTATTCCTTCCCAATACCACCTTACCTCTCTTCTCTTT
CCCCTCCCCCTCCTCTATTTTATCTCCTTTTTTCTTCTTTTTCCCCACCC
CTTCCTATTCCTTTCCCTTATCTCTCTTTTCCCTCTTCCTCTTTTTCCCC
ATTCCTCTTCCTTCTTCCCTTTTCTTACCTCCTTCTCTTCTTTCCTATCC
TTCTCTCCCTCTCTATCACTTCTTTCTTTTTTCCCACCTTCTTTTCCCTT
CTTTCCATCCCTCTCCCTTGCTTTATTCTTTACTTTTTTCCACCTTACCT
ACCCTCCTTTGTCTTCTNTTC
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCAGGTTCAGGACACAACGG
TTTTGAATGCAAGCTACACGTTTCATGTCCTATGCGTCACATGAAGCATG
TGACACACAGGAGGACAGGACATTACTGGTGACTTCCTTCTCCCTCTTTT
TATTGCATTCTTTAAAAGCCCTTTTCCATTCATTCCATAGTTATTTGGAG
CCTCTCTCCTTCCCTCTAATTCAGCGAAATGTCTCCTCAGAAGGTGATAG
AGATTAATTTAACTTGAGATGTATTTCCCATGGGACATATCGAATTATCT
GTAGCTGGTGGTTTTTTTTTTTTTGAACAGCTCTGTTCTACGCTATTATA
TGTCTTATTCTCTCACCCCCCCCCCCAAGTAAAAAAAAATCCCATCTTTT
CTGGTCGTCCTCCTCTTCGCTGTATTAATAAGTTCGTATAAAACTCTTTA
TCTTCCCTCCTCTTTTTTTTTTCTTTGCTCCTTTTCTACCGCCTGTTGCA
ACTTCTCATCTATTACTTTTTTTTTTATTTTCCACATATTCTATCACTTT
TTTTTCGTACTACCCCATTTTTTTTTCCTCTTTTCTCTTCTCCCCCCCTC
CCCTACTATTTCCTCTCCCCCCCTTTATCTCTCTTCTTACCATTACCCAT
TCTCCCCCCCTGCTCTTCTCTTTTATTATTTGTTCTCTTTTCTCTTCTTC
ACTCACTCCTCTTCACCTTGTCTTCTCTTCTTATACTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_k06.g1 MSMg01no435_k06.g1 CHROMAT_FILE:
MSMg01no435_k06.g1 PHD_FILE: MSMg01no435_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:28 2005
         (297 letters)



>mm_chr4_63160245_63160941
          Length = 697

 Score =  514 bits (266), Expect = e-150
 Identities = 290/298 (97%), Gaps = 2/298 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttcaggttcaggacacaacggttttgaatgcaagctacacgtttcatgtcctatgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cttttcaggttcaggacacaacggttttgaatgcaagctacacgtttcatgccctatgcg 260

                                                                       
Query: 61  tcacatgaagcatgtgacacacaggaggacaggacattactggtgacttccttctccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacatgaagcatgtgacacacaggaggacaggacattactggtgacttccttctccctc 320

                                                                       
Query: 121 tttttattgcattctttaaaagcccttttccattcattccatagttatttggagcctctc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tttttattgcaatctttaaaagcccttttccattcattccatagttattcggagcctctc 380

                                                                       
Query: 181 tccttccctctaattcagc-gaaatgtctcctcagaaggtgatagagattaatttaactt 239
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttccctctaattca-ctgaaatgtctcctcagaaggtgatagagattaatttaactt 439

                                                                     
Query: 240 gagatgtatttcccatgggacatatcgaattatctgtagctggtggtttttttttttt 297
           |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 gagatgcatttcccgtgggacatatagaattatctgtagctggtggtttttttttttt 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)