BAC Information

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BAC

Clone NameMSMg01-436B19
Chromosome4 (Build37)
Map Location 55,553,277 - 55,694,926
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436B19.T7 (MSMg01no436_b19.b1)MSMg01-436B19.TJ (MSMg01no436_b19.g1)
ACCAG527257AG527258
length755771
length of high quality
(start - end)		558 (44 - 601)479 (77 - 555)
definitionCHROMAT_FILE: MSMg01no436_b19.b1 PHD_FILE: MSMg01no436_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:06 2005CHROMAT_FILE: MSMg01no436_b19.g1 PHD_FILE: MSMg01no436_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,694,374 - 55,694,926)(55,553,277 - 55,553,755)
sequence
CTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCCTATTTCTTCCTCGGTTTGATACAGATGACACTTCTGCAGTGAAA
GTCATCAGTTAACCTCTGCCCATATGTCACTACTCACCTGTGAATCCACA
GTTTGTTGAGGAAGCCAGTTGGGGTACTGTAACTCCACTGTGAAGAAGAA
CACTGTTCCAGTAACGTCATCACCACGAATTCCCCAAGACACATTGTTCA
TCCTTAAACATCTTAGCCAATAACAATTGACTAACGTCCCATGTGCTGAG
CCAGACACACATCTTCAATGCTATAAGAAAGAGGTGAGCCGGAGGAGGAA
GACAGTGCTAGACAATTGAAAAACATGAGGACACCCCCAGTGCAGGGACG
GCAAGGAAAGAAGGTAGAGAATACAGCTGATGGACGGGCCAGGGATGGGA
CAGAAAACAATGGTGAAGCAGATGTGAGGGATCAGTTTGTATTGAGTCTG
AAACAACAGACTGTCCTTCCCATTATCCCCCCTCTTTCTTATTCTCTGTT
CTTTTCTTTCCCAGNGCAAAGCTACAGACAAAGGAGGAAAACAAAGGAGG
GAGGTAAGGTGCTGCTTAGGACAATAGGATGTGAAAGAGGTTCAGCCCAG
TTCTCTTCTGTCAGTTCCACCCTTCATGACTGGTTTGGGTGTATATGCCA
TCCTATTGCCTTCTGTCCTCCTAGGCACTGTGTGTTAAACCATTAGCGCT
TGATG

CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGGACTATGGAAGATGGAAGAA
TGGTAGGAAGTGGAAGCGTGCCAAGACTGCTGGGGGAAAGTCATGAATGA
TGCCACCCAAGTAATTAGCCTGAGGTCCCGATGACCTTTAGCACATCGTT
CATATGGTCGCAGTGCATCTGACTGTGAGAAGGGCTTGAATATATGTGCT
TCATAGACTACGGTGAACATTAATTGAAACTGTAGGCATGAAAGGTGCCA
ATCAATATTACTTTTGTCCCTCTATCAGTGAGACTCTACATAGTTAATTA
CTTCTTCATTATACAATGCTGGGCCATGGTGAATTGTCTTGGTTCAAAGA
TTGGGATGCACTGTCTCCCAGTTATTGTCCTCCAGTAAGCATCACTGCAT
TTGGGTTACTCAGGCATTTATGGCAGTAAGTTCTGACTTCTTTCCAACTC
TGAAAGCACAGAAACTGTACTAAAGTTAGAATTGAACTGGAGTCCCCCCA
CTGTCCTAGCCTGCACCCACAGAATCAGAGGCCTGTTGAATCAAAGGCTA
TTGCTCTTTGCTTGTGGAACTGGAATGAGAAAACAGGCATCTTTGATTGC
TGTCCCGACCTCAGGCATTGTAAAGCCGTGATGAAATGAAACCGGTGTTG
AGTGGTTTCTGTGAGCACCCCTTTCCCCCCTGTGGTCCGTATACACCGCG
GGCTAATTATTTCTTTCATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_b19.b1 MSMg01no436_b19.b1 CHROMAT_FILE:
MSMg01no436_b19.b1 PHD_FILE: MSMg01no436_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:06 2005
         (558 letters)



>mm_chr4_55694169_55695126
          Length = 958

 Score = 1056 bits (546), Expect = 0.0
 Identities = 551/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcctatttcttcctcggtttgatacagatgacacttctgcagtgaaagtcatcag 65
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ggaattcctatttcttccttggtttgatacagatgacacttctgcagtgaaagtcatcag 699

                                                                       
Query: 66  ttaacctctgcccatatgtcactactcacctgtgaatccacagtttgttgaggaagccag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttaacctctgcccatatgtcactactcacctgtgaatccacagtttgttgaggaagccag 639

                                                                       
Query: 126 ttggggtactgtaactccactgtgaagaagaacactgttccagtaacgtcatcaccacga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttggggtactgtaactccactgtgaagaagaacactgttccagtaacgtcatcaccacga 579

                                                                       
Query: 186 attccccaagacacattgttcatccttaaacatcttagccaataacaattgactaacgtc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 attccccaagacacattgttcatccttaaacatcttagccaataacaattgactaacgtc 519

                                                                       
Query: 246 ccatgtgctgagccagacacacatcttcaatgctataagaaagaggtgagccggaggagg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ccatgtgctgagccagacacacatcttcaatgctataagaaagaggtgagccggaggagg 459

                                                                       
Query: 306 aagacagtgctagacaattgaaaaacatgaggacacccccagtgcagggacggcaaggaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aagacagtgctagacaattgaaaaacatgaggacacccccagtgcagggacggcaaggaa 399

                                                                       
Query: 366 agaaggtagagaatacagctgatggacgggccagggatgggacagaaaacaatggtgaag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agaaggtagagaatacagctgatggacgggccagggatgggacagaaaacaatggtgaag 339

                                                                       
Query: 426 cagatgtgagggatcagtttgtattgagtctgaaacaacagactgtccttcccattatcc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cagatgtgagggatcagtttgtattgagtctgaaacaacagactgtccttcccattatcc 279

                                                                       
Query: 486 cccctctttcttattctctgttcttttctttcccagngcaaagctacagacaaaggagga 545
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 278 cccctctttcttattctctgttcttttctttcccagtgcaaagctacagacaaaggagga 219

                        
Query: 546 aaacaaaggaggg 558
           |||||||||||||
Sbjct: 218 aaacaaaggaggg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_b19.g1 MSMg01no436_b19.g1 CHROMAT_FILE:
MSMg01no436_b19.g1 PHD_FILE: MSMg01no436_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:06 2005
         (479 letters)



>mm_chr4_55553077_55553955
          Length = 879

 Score =  919 bits (475), Expect = 0.0
 Identities = 478/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggactatggaagatggaagaatggtaggaagtggaagcgtgccaagactgctggggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggactatggaagatggaagaatggtaggaagtggaagcgtgccaagactgctggggg 260

                                                                       
Query: 61  aaagtcatgaatgatgccacccaagtaattagcctgaggtcccgatgacctttagcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtcatgaatgatgccacccaagtaattagcctgaggtcccgatgacctttagcacat 320

                                                                       
Query: 121 cgttcatatggtcgcagtgcatctgactgtgagaagggcttgaatatatgtgcttcatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgttcatatggtcgcagtgcatctgactgtgagaagggcttgaatatatgtgcttcatag 380

                                                                       
Query: 181 actacggtgaacattaattgaaactgtaggcatgaaaggtgccaatcaatattacttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actacggtgaacattaattgaaactgtaggcatgaaaggtgccaatcaatattacttttg 440

                                                                       
Query: 241 tccctctatcagtgagactctacatagttaattacttcttcattatacaatgctgggcca 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccctcaatcagtgagactctacatagttaattacttcttcattatacaatgctgggcca 500

                                                                       
Query: 301 tggtgaattgtcttggttcaaagattgggatgcactgtctcccagttattgtcctccagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtgaattgtcttggttcaaagattgggatgcactgtctcccagttattgtcctccagt 560

                                                                       
Query: 361 aagcatcactgcatttgggttactcaggcatttatggcagtaagttctgacttctttcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcatcactgcatttgggttactcaggcatttatggcagtaagttctgacttctttcca 620

                                                                      
Query: 421 actctgaaagcacagaaactgtactaaagttagaattgaactggagtccccccactgtc 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actctgaaagcacagaaactgtactaaagttagaattgaactggagtccccccactgtc 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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