Query= MSMg01no436_i16.b1 MSMg01no436_i16.b1 CHROMAT_FILE:
MSMg01no436_i16.b1 PHD_FILE: MSMg01no436_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:38 2005
(554 letters)
>mm_chr4_36215294_36216249
Length = 956
Score = 830 bits (429), Expect = 0.0
Identities = 462/473 (97%), Gaps = 5/473 (1%)
Strand = Plus / Minus
Query: 7 gaattcagcatg-ttttttttctttcttatagctctgtataatttgatttctgaaatatg 65
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattcagcatgtttttttttctttcttatagctctgtataatttgatttctgaaatatg 412
Query: 66 accacaatttcaatttcttattctttctgctctgtactaagcagtctttacatttgctgt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 accacaatttcaatttcttattctttctgctctgtactaagcagtctttacatttgctgt 352
Query: 126 catcttattgttctgattttgga-ttttttctttttatttgagaaccatctcctttatca 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 351 catcttattgttctgattttggatttttttctttttatttgagaaccatctcctttatca 292
Query: 185 tttctactatgttagaaaatatattat-atagaagttgcaacagtgaactctacttttct 243
|||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct: 291 tttctactattttagaaaatatatt-tgatagaagttgcaacagtgaactctactttttt 233
Query: 244 tgtattaaagcttttctattgtttgcctttacttcttttctttattgtctttgttcttcc 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tgtatcaaagcttttctattgtttgcctttacttcttttctttattgtctttgttcttcc 173
Query: 304 ttccttcctttcttcattctctcttctccttatgtttgtagtatattctgagaaagttat 363
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ttccttcctttcttaattctcccttctccttatgtttgtagtatattctgagaaagttat 113
Query: 364 tttgttgtaagattcctgcttcagccaaatatgcctaataattagtttaatcatctacta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tttgttgtaagattcctgcttcagccaaatatgcctaataattagtttaatcatctacta 53
Query: 424 atatatatttaaaaaaacacagcaccatatgaattcacaattctagtattgga 476
|||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 52 atatatattt-aaaaaacatagcaccatatgaattcacaattctagtattgga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 956
Length adjustment: 10
Effective length of query: 544
Effective length of database: 946
Effective search space: 514624
Effective search space used: 514624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_i16.g1 MSMg01no436_i16.g1 CHROMAT_FILE:
MSMg01no436_i16.g1 PHD_FILE: MSMg01no436_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:38 2005
(500 letters)
>mm_chr4_36063739_36064643
Length = 905
Score = 907 bits (469), Expect = 0.0
Identities = 495/505 (98%), Gaps = 5/505 (0%)
Strand = Plus / Plus
Query: 1 gccattttgcattattcagcttggagagttttgaaccagaatacctgagttgaacctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccattttgcattattcagcttggagagttttgaaccagaatacctgagttgaacctgcc 260
Query: 61 agctgtagttcagaaagaactggaacgggtgaggttattcatcagtaggcctctgagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgtagttcagaaagaactggaacgggtgaggttattcatcagtaggcctctgagatg 320
Query: 121 acaattacagctgggaattaaaagttactataaccgatgtcatttaacccaaaggtagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaattacagctgggaattaaaagttactataaccgatgtcatttaacccaaaggtagag 380
Query: 181 atcttggtggtcatctagataaacatagaagcagttaaaagagatcaa---ttgtatcat 237
|||||||||| || | |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 atcttggtggccagcaagataaacatagaagcagttaaaagagatcaacaattgtatcat 440
Query: 238 atgttctgacttgttgctctttcaagatttcaaagtgagtgaagtatatttattttatag 297
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 atgttctgacttgttgctctttcaacatttcaaagtgagtgaagtatatttattttatag 500
Query: 298 atcttaaattaacaatgtgcaattgaagacagttgtaaaatatagtcctttggtaattaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcttaaattaacaatgtgcaattgaagacagttgtaaaatatagtcctttggtaattaa 560
Query: 358 gagtccagaattttttcacccaaagggagcaaaagtaagtaaataaaaccaaaagagcaa 417
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagtccagaactttttcacccaaagggagcaaaagtaagtaaataaaaccaaaagagcaa 620
Query: 418 aattgaatagcagacagtctttgtagacacttttttt-ataggcaacatttt-agaagga 475
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 621 aattgaatagcagacagtctttgtagacacttttttttataggcaacatttttagaagga 680
Query: 476 gaatgaatgacacaaaagaatttaa 500
|||||||||||||||||||||||||
Sbjct: 681 gaatgaatgacacaaaagaatttaa 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 905
Length adjustment: 10
Effective length of query: 490
Effective length of database: 895
Effective search space: 438550
Effective search space used: 438550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
