Query= MSMg01no436_j17.b1 MSMg01no436_j17.b1 CHROMAT_FILE:
MSMg01no436_j17.b1 PHD_FILE: MSMg01no436_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:44 2005
(547 letters)
>mm_chr4_111728510_111729461
Length = 952
Score = 716 bits (370), Expect = 0.0
Identities = 515/576 (89%), Gaps = 36/576 (6%)
Strand = Plus / Minus
Query: 5 gaattctttatcttgtcc--agtgtgacagtggaggaatcagcactctacagttaggcag 62
||||||||||||||| | ||||||||||||||||||||||||| ||| || |||||||
Sbjct: 649 gaattctttatcttg--cagagtgtgacagtggaggaatcagcaccctataggtaggcag 592
Query: 63 tcatagtcatttgcacatcagtcccaggaagtttccatttagagg-c----ctttggcaa 117
||||||||||||||||||| || |||||||||||||||||||||| | ||||||| |
Sbjct: 591 tcatagtcatttgcacatctgttccaggaagtttccatttagaggacttttctttggcga 532
Query: 118 ctgaaactgagaccctttgcaattacatctgatgtagttagaatttatagaagtcagttt 177
|| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 531 ctaaaactgagacccttttcaattacatctgatgtagttagaatttatagaaatcagctt 472
Query: 178 gtacaaaagtaattttctgtactctgactcagaacatttctattcttagaacttcttata 237
||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 471 gtacaaaagtaatcttctgcactctgactcagaccatttctattcttagaacttcttata 412
Query: 238 tatcttcctgtccatgggataaaagaggccctttgttgtttgatttttctcacctaagct 297
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 411 tatcttcctgtccatgggataaaagaggccctttattgggagatttttctcacctaagct 352
Query: 298 catgtgacattacttttactcgagtcattccttggggataaaatggaatagcagagtgac 357
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct: 351 catgtgacattacttttactcgagtcattccatggggataaaatagaatagcagagtgtc 292
Query: 358 aacacaatactcgaaacctaacttgacctcagatactgcataaggacttgacaggtactc 417
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 291 aacacaatactcgaaacctaacttgacctcaggtactgcataaggacttgacaggtactc 232
Query: 418 ttgctttgttttgccttaat-tatgttt-ttt--ttg---g---g---g---g---g--- 455
||||||| ||||||||| | ||||||| ||| ||| | | | | |
Sbjct: 231 ctgctttgctttgcctta-tgtatgtttgtttgtttgtttgtttgtttgtttgtttgttt 173
Query: 456 -g-g-gtt-attcctgtgataaaaatgtttaatatgaaatcttcttccttaatagaactt 511
| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tgtgtgtttattcctgtgataaaaatgtttaatatgaaatcttcttccttaatagaactt 113
Query: 512 tatttttaactatatattttctttatttacattttc 547
||||||||| || |||||||||||||||||||||||
Sbjct: 112 tatttttaattagatattttctttatttacattttc 77
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 952
Length adjustment: 10
Effective length of query: 537
Effective length of database: 942
Effective search space: 505854
Effective search space used: 505854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_j17.g1 MSMg01no436_j17.g1 CHROMAT_FILE:
MSMg01no436_j17.g1 PHD_FILE: MSMg01no436_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:44 2005
(522 letters)
>mm_chr4_111557013_111557934
Length = 922
Score = 986 bits (510), Expect = 0.0
Identities = 519/522 (99%)
Strand = Plus / Plus
Query: 1 tatgggcctttgctgtgttctctggatgtcagcaagaatagatcttgcaagtggtagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgggcctttgctgtgttctctggatgtcagcaagaatagatcttgcaagtggtagaca 260
Query: 61 tcttgcttagggagctataaagggaagggttattatgaatgccttcgccatgaccttgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgcttagggagctataaagggaagggttattatgaatgccttcgccatgaccttgag 320
Query: 121 ttctctcactgactgtggggagtcatgtacatgatatcctttaacttttcaaggcacttc 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ttctctcactgactgtggggagtcatgtacatgacatcctttaacttttcaaggcacttc 380
Query: 181 cagaagatttgggccagtgacttctttttatcctgagatgtagtcaaggtccccatcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaagatttgggccagtgacttctttttatcctgagatgtagtcaaggtccccatcctg 440
Query: 241 gcatctctacccccatcacatttgtcagaattcagtatagctacaggacaactgtgtgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatctctacccccatcacatttgtcagaattcagtatagctacaggacaactgtgtgtg 500
Query: 301 catcaccccagaagttcacactgggttaacactggtgtccttgctgctgctttacttgtg 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catcaccccaggagttcacactgggttaacactggtgtccttgctgctgctttacttgtg 560
Query: 361 aatagaaagacacaggcttagagatggggcagaagccacagaacctcaggctgtcctgaa 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatagaaagatacaggcttagagatggggcagaagccacagaacctcaggctgtcctgaa 620
Query: 421 ctttcacaagtctctcttctccagcagtctcttcctctacctttgggaatcttctcaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcacaagtctctcttctccagcagtctcttcctctacctttgggaatcttctcaaat 680
Query: 481 gaacacttcttccaggaagtctttcctgcccctctcttagga 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaacacttcttccaggaagtctttcctgcccctctcttagga 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
