BAC Information

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BAC

Clone NameMSMg01-436M04
Chromosome4 (Build37)
Map Location 118,681,025 - 118,681,456
singlet/doubletsinglet
Overlap genenone
Upstream geneSt3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703
Downstream geneOTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436M04.T7 (MSMg01no436_m04.b1)MSMg01-436M04.TJ (MSMg01no436_m04.g1)
ACCAG527751AG527752
length756765
length of high quality
(start - end)
525 (51 - 575)434 (80 - 513)
definitionCHROMAT_FILE: MSMg01no436_m04.b1 PHD_FILE: MSMg01no436_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:55 2005CHROMAT_FILE: MSMg01no436_m04.g1 PHD_FILE: MSMg01no436_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCAGGGCTGTTTACATGGTTCAGCGATTAAGAGCTCATTCTGA
TCTTGCAGAGGACCTGGGTTTGCTTTTCTAGCACCCATATTGGGCAGTTC
ACAACCACCTGTAATTCCATATCTAGAGGATGAGACTTCTAGCCTTCAAA
GGCACCTGCAACTCGCTGCACATACTACACATCAACACACACACAGAGAC
TTTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGCTATCCCCTTT
CCTAGTTTCCCTCTGAAAACCCCTTATTCTCTTCCCCCTCCCCCTGCTCC
CCAACCCACCCACTCCCACTTCCCGGCCCAGGAATTCCCCTATACTGGGG
CACAGAACCTTCACAGGAATAAAAAACCTCTCCTCCCATTGATGACCAAC
TAGGCCATCCTCTGCTACATATGCAGCTAGAGACACGAGTCCCTCCTTGT
GTTTTCTTTGATTGGTGATTTAGTCCCAGGGAGCTCTGTGGCTACTGGTT
AGTTCATATTGATGTTCCTCCTATGGTGCTGCTAACCCCTTCAGCTCCTT
GGGTACTTTTTCTCTGGCTCCTTCATTGGGGACCCTGACACACTATGCTT
TTTAATTTACATACTTATATTATGAATTCCAGTTTTGGATGTGGAATCGC
CGAAATAAATGCAAGCCTTTTTCTAGTCACACCTCTTCTTACGCTCTTCC
TTCTTN
NTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTTTCAGGAGGCCCTTGA
AACAAAGGTAGACTTGTCCTTTAACCTTCACAGAATGAAGAGAATGTCAG
GCCTAGGAAGGACTTCAGAGGAAAAAAAAAACCCACTCCCTTCTCTTTGC
CCCCAGGGATGCCTACGCCCAGGGAGGGGCAGAGGCCTGGCGGACCTTCT
GGCCGATGGTGGGAGGAAAGGCCCGTGCTCGCTTGCCTGCTACAGGACCC
ATCTCAGCAGGTCCCCAGGCTGCATATAAAAGAGTGGGAGGGGCCTTGGA
AGAGCGACTGCTGTGGAGCCTGGCTCTGAGCCTGTCTGGCCAGGCCTGCT
GGGCTCCAGGAGGCCTCAGTAGTTTTCCATAGCCAGTAGGCCGACAGCCT
GGGCCATGTGCTACCCTCTCCCCTTGCCCTCCACATTCCTCTGCATATTC
AGGCAGGACAGCGGCATTCTTTGGAGCTGGAGAAAAAGCAGGGATAGGGG
CAGAAACCCAGATATATGCAAGATTTTCAGATAAGAGCTTGGCCATAAAA
ACGGTTTTCCAGGAAAGATCACACATATGTCTATAATGGTGAAGTTTTTC
AGATCCGTCAAACTCTTGTCTATTCGTTGTCTCAAAGATGTGGTTTGTTC
CCTTCTTCATACGCTTGGTCTTGATAACAACTAACCCCTTAAATGGTCCG
TTTCTCATTCTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_m04.g1 MSMg01no436_m04.g1 CHROMAT_FILE:
MSMg01no436_m04.g1 PHD_FILE: MSMg01no436_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:55 2005
         (434 letters)



>mm_chr4_118680825_118681656
          Length = 832

 Score =  785 bits (406), Expect = 0.0
 Identities = 427/434 (98%), Gaps = 2/434 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgctttcaggaggcccttgaaacaaaggtagacttgtcctttaaccttcacagaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctttcaggaggcccttgaaacaaaggtagacttgtcctttaaccttcacagaatgaa 260

                                                                       
Query: 61  gagaatgtcaggcctaggaaggacttcagaggaaaaaaaaaacccactcccttctctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaatgtcaggcctaggaaggacttcagaggaaaaaaaaaacccactcccttctctttg 320

                                                                       
Query: 121 cccccagggatgcctacgcccagggaggggcagaggcctggcggaccttctggccgatgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 cccccagggatgcctacgcccagggaggggcagaggcctggcggaccttctggctgatgg 380

                                                                       
Query: 181 tgggaggaaaggcccgtgctcgcttgcctgctacaggacccatctcagcaggtccccagg 240
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tgggaggaaaggcc-gtgctcgcttgcctactacaggacccatctcagcaggtccccagg 439

                                                                       
Query: 241 ctgcatataaaagagtgggaggggccttggaagagcgactgctgtggagcctggctctga 300
           ||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 ctgcagagaaaagagtgggaggggcct-ggaagagcgactgctgtggagcctggctctga 498

                                                                       
Query: 301 gcctgtctggccaggcctgctgggctccaggaggcctcagtagttttccatagccagtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcctgtctggccaggcctgctgggctccaggaggcctcagtagttttccatagccagtag 558

                                                                       
Query: 361 gccgacagcctgggccatgtgctaccctctccccttgccctccacattcctctgcatatt 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gccaacagcctgggccatgtgctaccctctccccttgccctccacattcctctgcatatt 618

                         
Query: 421 caggcaggacagcg 434
           ||||||||||||||
Sbjct: 619 caggcaggacagcg 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 832
Length adjustment: 9
Effective length of query: 425
Effective length of database: 823
Effective search space:   349775
Effective search space used:   349775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)