Query= MSMg01no436_m09.b1 MSMg01no436_m09.b1 CHROMAT_FILE:
MSMg01no436_m09.b1 PHD_FILE: MSMg01no436_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:56 2005
(464 letters)
>mm_chr4_74994048_74994910
Length = 863
Score = 719 bits (372), Expect = 0.0
Identities = 410/424 (96%), Gaps = 5/424 (1%)
Strand = Plus / Minus
Query: 39 aaaactgcatcatgatgatagagttggtgaaagatacagtcatttagtagaggcaatatt 98
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 594 aaaactgcatcatggtgatagagttggtgaaagatacagtcatttggtagaggcaatatt 535
Query: 99 tagattttataaaccaaaaaagaatgatgtaagtatgttcttgatacagtgatacaagct 158
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 534 tagattttataaaccgaaaaagaatgatgtaagtacgttcttgatacagtgatacaagct 475
Query: 159 acagagcctgtaggagtttagagaagagaattggtacacaatacttagactggaaaggta 218
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 474 a-agagcctgtaggagtttagagaagagaattggtacacattactcagactggaaaggta 416
Query: 219 ccatgaaagacacaacataagtgattaccactactgaaaagtaacttagtaatactcaag 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ccatgaaagacacaacataagtgattaccactactgaaaagtaacttagtaatactcaag 356
Query: 279 cctttcatactcataattttacagatctagaatctgaaagtcactaaaagtagatgattt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cctttcatactcataattttacagatctagaatctgaaagtcactaaaagtagatgattt 296
Query: 339 gtttaaaagatagtccacaggatatagcatcattacagacattgaaaatataaaagggtt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 295 gtttaaaagatagtccacaggatatagcatcattacagacattgaaaatataaaagg--t 238
Query: 399 tttttttcaatgtcttctctgcctttgcctttttttttaatttttaaatttttttt--ta 456
||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||
Sbjct: 237 tttttttcattgtcttctctgcctttgtcttttttcttaatttttaaattttttttatta 178
Query: 457 tttt 460
||||
Sbjct: 177 tttt 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_m09.g1 MSMg01no436_m09.g1 CHROMAT_FILE:
MSMg01no436_m09.g1 PHD_FILE: MSMg01no436_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:56 2005
(625 letters)
>mm_chr4_74838743_74839767
Length = 1025
Score = 1106 bits (572), Expect = 0.0
Identities = 615/637 (96%), Gaps = 12/637 (1%)
Strand = Plus / Plus
Query: 1 tttcatgtanacgaagcattcctgccctatccaataatttatatctaccctggaaatca- 59
||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tttcatgtaaatgaaacattcctgccctatccaataatttatatctaccctggaaatcaa 248
Query: 60 -----------caagatctatgtagcccttgtactccccaagtaaatttaaacagtctca 108
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tacccactccacaagatctatgtagcccttgtactccccaagtaaatttaaacagtctca 308
Query: 109 ttgaagctgatcctggcagtcagtctgctggtactcattgtcatctgaatcctgccccct 168
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttgaagctgatcctggcaatcagtctgctggtactcattgtcatctgaatcctgccccct 368
Query: 169 gattctgcttcctttgttctcttggtccagtgctcaatcaccccagggagaagggagagc 228
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 369 gaatctgcttcctttgttctcttggttcagtgctcaatcaccccagggagaagggagagc 428
Query: 229 cacaatatatgtgtatatgtatgaaaatactgctttccctaactgagtacactgtaattc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cacaatatatgtgtatatgtatgaaaatactgctttccctaactgagtacactgtaattc 488
Query: 289 tagtgtgtatcataatggcaaagaaggacctttaaagtatatatcactgagcatcaacac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tagtgtgtatcataatggcaaagaaggacctttaaagtatatatcactgagcatcaacac 548
Query: 349 ttcagtttataattatatagatattagtgaacctgaaaattctcatttcctacaaattct 408
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 549 ttcagtttataattatatagatattagtgaacctgaaaattcacatttcctacaaattct 608
Query: 409 aaggtagagtactgctgcctttgagaccataaattaagaactgctaatgtaggccttgtg 468
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 609 aaggtagagtactgctgtctttgagaccataaattaagaactactaatgtaggccttgtg 668
Query: 469 gtcccgggtctgaagattgtccctgtcaagaagggaaccacaaatatgtacataggaaaa 528
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gtcccgagtctgaagattgtccctgtcaagaagggaaccacaaatatgtacataggaaaa 728
Query: 529 ggaaaatgttttataatagctacatatttttcccttcaaaggaagctcctctttcttcat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggaaaatgttttataatagctacatatttttcccttcaaaggaagctcctctttcttcat 788
Query: 589 attatcttcatccaatgaaaatgttgatatgaataat 625
|||||||||||||||||||||||||||||||||||||
Sbjct: 789 attatcttcatccaatgaaaatgttgatatgaataat 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
