BAC Information

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BAC

Clone NameMSMg01-436P16
Chromosome4 (Build37)
Map Location 126,593,919 - 126,594,531
singlet/doubletsinglet
Overlap genenone
Upstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320
Downstream geneSfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436P16.T7 (MSMg01no436_p16.b1)MSMg01-436P16.TJ (MSMg01no436_p16.g1)
ACCAG527919AG527920
length740757
length of high quality
(start - end)		606 (70 - 675)505 (78 - 582)
definitionCHROMAT_FILE: MSMg01no436_p16.b1 PHD_FILE: MSMg01no436_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:12 2005CHROMAT_FILE: MSMg01no436_p16.g1 PHD_FILE: MSMg01no436_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTAAGTTTTCTTTTGAGATATTTATCACAACAAAGCTTGTAA
AATACTAGAGACCAATTATTCTTAGAATACTGGGTGTCTCAGACATACTT
ACTCCCTTTTGGTGGTGGAAATATTAATATACTATACAACCTTGAGCAAT
ATTGATATTTATTATATATACATAGTGGCATATCAAATTAAGCAGCTGAA
GCTGACATGAAATATGTACCTAGACTTAGGTACAAAAGGAAAACTGCCTA
AACCTTCTGCAATTATAATAGTATTTTAACACAGTAATTTTCTTTCTTTG
GTGTTTTTTTTTTTGTTTTTGAGACAGAGTTTCAATGTACAACCATAAAT
GGCCTAGTACTTGACAAAGAGACCAGACAAAGCCCAAACTCCAGAATCCT
GCTGCCTCCAAAGTACTGGGATCACAGGTGAGTACTACTAAAATGACTAA
TTTGAGTACTTTAAAAAGAAAATGTACGTAAAACTCGATGGCTAACACAA
CACAGCTTCAAATAAAAGCAAGATAGGCATTATTGATTTTTTTTTCTACC
TTTTGCCTCAGGCACTAACACATTCATGTGTGGCACTGCTGTAACAGTTA
TTTGCACATATTCAGTTTTCTCAGTGAAATGCCACCATGAATATCTTTAA
TTCTTAAAGTAAGATCACTAGGTTACGAGATCCATTATAA

NGGCCGATGAAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTTACCCC
ATAAAAACCCCTAGCTTCTGAGCCTTGTGGCTGACATCCGTTATCTCCTG
TGTGGGATGCATGTCGGTCCGGAGCTCTGTAATTAAACGACCTCATGTAA
TTACATCAAGATGGTCCTTCGTGATTTTTTGGGTGCACGCCGAATCAGGA
ATTGAGTGTGGGTTTCCCCACTAGGTTCTATCAGGGCAAGATAAGACAAG
AAACTAACTTTAGGCTGTGATAGGGAAGTAGGATAAGGCAGGAATTGTAA
TCTTAGGGTGGAACTAGTCCTCAGACAAGATTTTTGGGCTTGGAGGAGGA
AGTGGGCTCAAGTATTTCGGTCATTAAGATAAGCCCTTTTTCAGAGGGAG
GCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG
AGTTCCAGGACAGCCAGGGCTCTCTCTCTCTCTATATATATATATATCTT
ACAGCTGTTTTGTTCCTTATTGAATCGCTTGCCCAAAATACTTGCATGTA
ATTAAAGTGGTATAAAAAGTGGGTTGGAAAATAAAAATTTGCCTACAGTC
TCAGAATTGACTGGGGTCACGCCACCAAGGTTGNCTAACTGGCCTTTTTT
CCTTTAAACCCCCCTCCCCCCAAGGAAAAACCCGTTTAATGACTGAAAGG
GCTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_p16.b1 MSMg01no436_p16.b1 CHROMAT_FILE:
MSMg01no436_p16.b1 PHD_FILE: MSMg01no436_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:12 2005
         (606 letters)



>mm_chr4_126593719_126594724
          Length = 1006

 Score = 1135 bits (587), Expect = 0.0
 Identities = 604/613 (98%), Gaps = 7/613 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgagatatttatcacaacaaagcttgtaaaatactagagaccaattattcttagaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgagatatttatcacaacaaagcttgtaaaatactagagaccaattattcttagaata 260

                                                                       
Query: 61  ctgggtgtctcagacatacttactcccttttggtggtggaaatattaatatactatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggtgtctcagacatacttactcccttttggtggtggaaatattaatatactatacaa 320

                                                                       
Query: 121 ccttgagcaatattgatatttattatatatacatagtggcatatcaaattaagcagctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgagcaatattgatatttattatatatacatagtggcatatcaaattaagcagctga 380

                                                                       
Query: 181 agctgacatgaaatatgtacctagacttaggtacaaaaggaaaactgcctaaaccttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgacatgaaatatgtacctagacttaggtacaaaaggaaaactgcctaaaccttctg 440

                                                                       
Query: 241 caattataatagtattttaacacagtaattttctttctttggtgttttttttttt----- 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 441 caattataatagtattttaacacagtaattttctttctttggtgtttttttttttttttt 500

                                                                       
Query: 296 -gtttttgagacagagtttcaatgtacaaccataaatggcctagtacttgacaaagagac 354
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttttgagacagagtttcaatgtacaaccataaatggcctagtacttgacaaagagac 560

                                                                       
Query: 355 cagacaaagcccaaactccagaatcctgctgcctccaaagtactgggatcacaggtgagt 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagacaaagcccaaactccagaatcctgctgcctccaaagtactgggatcacaggtgagt 620

                                                                       
Query: 415 actactaaaatgactaatttgagtactttaaaaagaaaatgtacgtaaaactcgatggct 474
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 actactaaaatgactaatttgagtactttaaaaagaaaatgtatgtaaaactcgatggct 680

                                                                       
Query: 475 aacacaacacagcttcaaataaaagcaagataggcattattgattttttttt-ctacctt 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 aacacaacacagcttcaaataaaagcaagataggcattattgattttttttttctacctt 740

                                                                       
Query: 534 ttgcctcaggcactaacacattcatgtgtggcactgctgtaacagttatttgcacatatt 593
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgcctcagtcactaacacattcatgtgtggcactgctgtaacagttatttgcacatatt 800

                        
Query: 594 cagttttctcagt 606
           |||||||||||||
Sbjct: 801 cagttttctcagt 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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