Query= MSMg01no437_e12.b1 MSMg01no437_e12.b1 CHROMAT_FILE:
MSMg01no437_e12.b1 PHD_FILE: MSMg01no437_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:37 2005
(528 letters)
>mm_chr4_80567836_80568769
Length = 934
Score = 890 bits (460), Expect = 0.0
Identities = 512/534 (95%), Gaps = 12/534 (2%)
Strand = Plus / Plus
Query: 4 ggaattcacactgtatcc---gacaggccagctttcccacttccaaaactgtttgttcca 60
||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacactg-at--aaagacaggccagctttcccacttccaaaactgtttgttcca 260
Query: 61 ggtgtcagggcttggccaatataaatagaggaaattcatttccatttacactttaattcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtcagggcttggccaatataaatagaggaaattcatttccatttacactttaattcc 320
Query: 121 aaaagtccagcatcactactgggaatgttctggagtttcaccacatgaactgctggggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aaaagtccagcatcactactgggaatgttctggagtttcaccacatgaactgctgggtca 380
Query: 181 tgtttgtttgcattcagtctcgagacaaatggactccatttggattccacccagtgctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttgtttgcattcagtctcgagacaaatggactccatttggattccacccagtgctta 440
Query: 241 cagaggaatgtagtgttatgattttttttt---aatcattg---acttggttttgatgca 294
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct: 441 cagaggaatgtagtgttatgattttttttttttaatcattgttgacttggttttgttgca 500
Query: 295 ttaggaagaagcaaccttaaaatcctatgcctcttagttactcttatgtgtagagtattt 354
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaggaagaagcaacctgaaaatcctatgcctcttagttactcttatgtgtagagtattt 560
Query: 355 ggtgctgctcaaatgcatcaactcttctgagagcaaagaaaggaattaaagttaggaagt 414
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgctgctcaaatgtatcaactcttccgagagcaaagaaaggaattaaagttaggaagt 620
Query: 415 cagattgtttcatactcttgaaaattagtccaacagaaatctacttgcctgctctgtgcc 474
||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 621 cagattgattcatactcttgaaaattagtccaacagaaatctacgtgcttgctctgtgcc 680
Query: 475 cttctacaggaattaattttgtcacagctaggcatctgtgtgtttcacctaagt 528
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 681 cttctacaggaattaattttgtcatagctaggtatctgtgtgtttcacctaagt 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 934
Length adjustment: 10
Effective length of query: 518
Effective length of database: 924
Effective search space: 478632
Effective search space used: 478632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_e12.g1 MSMg01no437_e12.g1 CHROMAT_FILE:
MSMg01no437_e12.g1 PHD_FILE: MSMg01no437_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:37 2005
(485 letters)
>mm_chr4_80735478_80736362
Length = 885
Score = 895 bits (463), Expect = 0.0
Identities = 472/475 (99%)
Strand = Plus / Minus
Query: 1 taggttcacaagggacactgtctcaaaaataaataaggtggagagtgaaaaaggaagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 taggttcacaagggacactgtctcaaaaataaataaggtggagagtgaaaaaggaagaca 712
Query: 61 tgtgacatcagcctctggcctctacatgcagatgcatggtcatgcacacctatatacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tgtgacatcagcctctggcctctacatgcagatgcatggtcatgcacacctatatacatt 652
Query: 121 cacacaagaacaggaagacaagaagcattcatcatttctacttaattttatgaataacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cacacaagaacaggaagacaagaagcattcatcatttctacttaattttatgaataacac 592
Query: 181 tagttctaaatcacacatattgtttgttgtcctgaataaatagcttatggtattgaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tagttctaaatcacacatattgtttgttgtcctgaataaatagcttatggtattgaggaa 532
Query: 241 atacttttctattaattctggataaggtggtagattaaagtccccctccaagaaacttgg 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 atacttttctaggaattctggataaggtggtagattaaagtccccctccaagaaacttgg 472
Query: 301 taaaagaaaaaaatacccacaaaacacaactacttcactcaaaacagacaggaccagtaa 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 471 taaaagaaaaaaatacccacaaaacacaactacttcactcaaaagagacaggaccagtaa 412
Query: 361 ccaacaagaaatatccataaatcaacagcaagaaaagctgaaaaaccagtcaaaatcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ccaacaagaaatatccataaatcaacagcaagaaaagctgaaaaaccagtcaaaatcaca 352
Query: 421 gattaaacaacaggctatggaatgatgaatactgtgtcactggaaagttgagaag 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gattaaacaacaggctatggaatgatgaatactgtgtcactggaaagttgagaag 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
