CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGGTGAGTATAAAATCAGCAAGCTAATAATACATAATATCTATAT
ATATATACATACATAATAAGATATCTTTAAACAGAAACATACATAAAACA
GGACTATACATTCATTTGCAAAGATGTGACCAAAGGCTCAAAAGACCTCA
AGTCTATATTATCTTCAGGAACAATACTTCAGAAGCTGCTAATTGATGGT
TAGAGTGATGTAAGAGAGCATAAATACTCTGAGTAACGAGAGCTGGTGCA
CATGTTAGGAAAACAGCAACAGTCTTGGCAGACAACTGCTAAGTACTTAT
CGATACCGAGAACTAGAATGGAAATGCTGGAGGGATTCTCTTCGGCAGTG
ATCCAGTGAGTTAAGTGTCCTACCTCTTCTAGATGAGGACACCAAGGTTT
AGATTAGCCAAAGGTCCCGGGATTCAAACTGGTGCTTAGTACCTGTTTCC
TTCCTTCCTTCCTTATATAATGACAATGACAACAAGATATATGGCAATAT
GGCAAGGAATTATCAGTGCTAACTTGACACAAGCTAGAATTAACTGGGAG
AAGAGAACCTCAACAGAGAAAATTCCCTCCCTAGATTGGCCTGTGGGCAA
GCCTGTGGNCTATTTTCTTAGTTGATGATTGATGTGGAACGGCCACCATC
TCTGGGCTGGTGGCCCTGGATGTTTAAGAAAACCAAGGGAAGAAGCCCCG
TGGGAATAACCTAACGTACAA

ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGCTTTGGCATGGTTGCTACTCACT
GCTCATCCGGGTCTACAGTGAGAGAACAGGAGAATGTGAGCATGAGCGCA
CGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNN
NNNNTNNNNNTTNTNNTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTT
TTTTTTCTNNNTTTTTTNTTTTCTTTTTTTTTTTTTTCTTCTTTTTTTTC
CTCTTCCTTCCCCTTTTTTTTTTTTTNCCCCCCTTCCCTCCCCTCCCTTC
TTTTTTTTCTCCTCTTCCCTTTCCCCTTTCCTTTCTTCTCTTCCTTCTTT
TTCCTTCTCCCCCCCCTTTCCTTTTTCTTCTTTCCCCCCCTTTCTTTTTC
CTTCTCTCTCTCTTTTCTTCTTTTTCCCCTTCCCCCCTCCTTTCCTCTCT
TTTTCCCTTTTCTCTTTTTCCCCCTCNTCTTTCTNTTCCTTTCCTTCTTC
CCCCTCTCCCCCCTCTTCCTCTTTTTTTCCTCTTTTCCCCTTTCCCTCTT
CTCTTCCCCTCCTCTTTTTCCTCTTTCTTTCCCTTTCTTTTTTTTTTCTC
TTTTTTCCTCCCCCTTCTTTTCCCCTTCTTCTTCTTTTCTTTTCCCTTTC
TTTTCTTTCCTCCTCTNCCTTCTCCTCCCCCCTCCTCTTCCTCCTTCTTT
CTTCCCCCTTTCTCTTATTCTCCTTCCTTTCCTTCTCCCTTTTTTTTTCC
CTCCTCCTTCTTTGTTCTTCTCTCCCCCTCCCTCTTTCTCTTTTATCCCC

Query= MSMg01no437_f16.b1 MSMg01no437_f16.b1 CHROMAT_FILE:
MSMg01no437_f16.b1 PHD_FILE: MSMg01no437_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:43 2005
         (560 letters)



>mm_chr4_31977009_31977964
          Length = 956

 Score = 1006 bits (520), Expect = 0.0
 Identities = 545/556 (98%), Gaps = 6/556 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagggtgagtataaaatcagcaagctaataatacataatatctatatatatata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 207 gaattccagggtgagtataaaatcagcaagctaataatacataatatc--tatatatata 264

                                                                       
Query: 65  catacataataagatatctttaaacagaaacatacataaaacaggactatacattcattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catacataataagatatctttaaacagaaacatacataaaacaggactatacattcattt 324

                                                                       
Query: 125 gcaaagatgtgaccaaaggctcaaaagacctcaagtctatattatcttcaggaacaatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 gcaaagatgtgaccaaaggctcaaaagacctcaagtctatattatcttcagtaacaatac 384

                                                                       
Query: 185 ttcagaagctgctaattgatggttagagtgatgtaagagagcataaatactctgagtaac 244
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 ttcagaagctgctaattgatggttagagtgatgtaacagagcataaatactctgagtaac 444

                                                                       
Query: 245 gagagctggtgcacatgttaggaaaacagcaacagtcttggcagacaactgctaagtact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagagctggtgcacatgttaggaaaacagcaacagtcttggcagacaactgctaagtact 504

                                                                       
Query: 305 tatcgataccgagaactagaatggaaatgctggagggattctcttcggcagtgatccagt 364
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatcaataccgagaactagaatggaaatgctggagggattctcttcggcagtgatccagt 564

                                                                       
Query: 365 gagttaagtgtcctacctcttctagatgaggacaccaaggtttagattagccaaaggtcc 424
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagttaagtgccctatctcttctagatgaggacaccaaggtttagattagccaaaggtcc 624

                                                                       
Query: 425 cgggattcaaactggtgcttagtacctgtttccttccttccttccttatataatgacaat 484
           |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 625 cgggattcaaactggtgcttagtacctgtttccttccttcctt----atataatgacaat 680

                                                                       
Query: 485 gacaacaagatatatggcaatatggcaaggaattatcagtgctaacttgacacaagctag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacaacaagatatatggcaatatggcaaggaattatcagtgctaacttgacacaagctag 740

                           
Query: 545 aattaactgggagaag 560
           ||||||||||||||||
Sbjct: 741 aattaactgggagaag 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 956
Length adjustment: 10
Effective length of query: 550
Effective length of database: 946
Effective search space:   520300
Effective search space used:   520300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)