BAC Information

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BAC

Clone NameMSMg01-437J03
Chromosome4 (Build37)
Map Location 17,562,063 - 17,562,368
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437J03.T7 (MSMg01no437_j03.b1)MSMg01-437J03.TJ (MSMg01no437_j03.g1)
ACCAG528371AG528372
length793769
length of high quality
(start - end)
285 (51 - 335)309 (81 - 389)
definitionCHROMAT_FILE: MSMg01no437_j03.b1 PHD_FILE: MSMg01no437_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:00 2005CHROMAT_FILE: MSMg01no437_j03.g1 PHD_FILE: MSMg01no437_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAGGA
TCCGCGGAATTCTCTACTGAATACCACCAAAAAGAATGTTCAGCATCCTT
AGTCATCAGGGAAATGCAAAGCAAAACAACTCTGAGATTCCATCTCACAC
CAATTAGAATGGCTAAGTTCAAAAACTCAGGTAACCGCAGAGGCTGGTTA
GGATGTGGAGAAAGAGGAACACTCCTCCATTTTTGGTGGGATTGCAAACT
GGTAGAACCACTCAGGAAATCAGTTTGGTGATTCCACAGAATATCGGCTA
TAGTACTACCTGAGGACCCAGCTATACCACTCCTGGTTTTACACCCAAAA
GATTCTCCAATATATAACAAGACCACATGCTCCACTATGTTCATAGGAGC
CTTATTTATAATACCTAGAAGTTGGAAAGAACCTACACGTCCTTTAACAG
AGGAATGGATACCGACAATGTGGTACACTTACTTACCGGAGCATCACTCA
GCTTTACTAATAGCACATTGATCGACTTCCTAGGTCAAAGGACGGAAAAA
GAAAGCATCCTCCCTGAGCGACGCCACTCATTTCCCTTCCAGAACCACCT
CGCCCATGCCCTTCTCTCTCTCATCGGGTTCTTCAACCTTTTTTTCCTCG
CACACTCCCTATTCTACCTTCTCTCTTCTATTTCCTCTCCCCCTCCGCCA
TTTACTCGTCCCATCTCTTTGCTGTCGGCCTCGCACTTTCCATCCCCTTA
TTTCCTACCTGTCCTCTACTCACCTCATCCTCCTCTCCTTACT
TCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATCTTAATAAGTGCTTA
CTGGGAAGAATTTTGGGAATTTCTGAAATAAATGCAATTGTCGGTTAAGC
TATTATATAATTATCTCTGGAGATCTCAGTTTTAAATCAAGAGGCATTTT
TAGAATTGTATAATATTTTATATTTTCTGCTCCATCATGTTTGGCTGCAA
GGATCTCCCTCTGTATTTGTAAGGATCTGGCAGGACCTCTCAGGAGACAG
CCATATCAGGATCCTTTCAGCATGTACTTCTTGGCATCCACAACAGTGTC
TGGGGTTGGTAACCTTATATGGGATGAATCCCTAGGCGGGATATGGGATA
CTTATAAGAGAAGGTAAAAAAAATTATGATCAACATTGTGATGGTTTGCA
TATTCTTGGACCATGGAGCGGTACCTATTGCACGTGTGGTCTTGTTGGAA
TAGCCCTGACCCGCCTGTACTAGCTTTGTCACCCTCGTCGCGCCCTTACT
ACTCTTCCCCCACCTCCTTGGTCTTACCCCTCCTTTACTCCCCCTCGCTC
TTTGCGCCCCGCAAACTGGTCCCATTTTCCCCCCTCCTCTTTTCTCACCC
TTTCCGCTCCCTTCTACCCCTTCATACTCTTCCCCATTTATTCCCCCCTT
ATTTCTCCCCCCCTTCTTTCTCCTTCTCCCTTTTCTTCCTTTTTTCTATC
CCCCTCTTTTTTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_j03.g1 MSMg01no437_j03.g1 CHROMAT_FILE:
MSMg01no437_j03.g1 PHD_FILE: MSMg01no437_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:00 2005
         (309 letters)



>mm_chr4_17562019_17562727
          Length = 709

 Score =  592 bits (306), Expect = e-173
 Identities = 306/306 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatcttaataagtgcttactgggaagaattttgggaatttctgaaataaatgcaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agaatcttaataagtgcttactgggaagaattttgggaatttctgaaataaatgcaattg 291

                                                                       
Query: 61  tcggttaagctattatataattatctctggagatctcagttttaaatcaagaggcatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tcggttaagctattatataattatctctggagatctcagttttaaatcaagaggcatttt 231

                                                                       
Query: 121 tagaattgtataatattttatattttctgctccatcatgtttggctgcaaggatctccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tagaattgtataatattttatattttctgctccatcatgtttggctgcaaggatctccct 171

                                                                       
Query: 181 ctgtatttgtaaggatctggcaggacctctcaggagacagccatatcaggatcctttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctgtatttgtaaggatctggcaggacctctcaggagacagccatatcaggatcctttcag 111

                                                                       
Query: 241 catgtacttcttggcatccacaacagtgtctggggttggtaaccttatatgggatgaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 catgtacttcttggcatccacaacagtgtctggggttggtaaccttatatgggatgaatc 51

                 
Query: 301 cctagg 306
           ||||||
Sbjct: 50  cctagg 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)