ATCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCANGAGGAGGCG
CGGAATTCATGAGGTTACAAAAAAGAGAGGGAGGGGGAACAGTATTTTTT
AAAAGCTTCCAATAGTAGGAACTTCTTCAGCATTACCTAAAGGGTTTTTA
AAACTGGGGTACTTATGGGAAGCACAAAATCTTTCCTTAGTTACCCTCCC
TATCTTCCTCCAAGGCAACCTGTCTGGCTAGCAAAGCCAGTACTTAAAAG
CCACCTATATCCTGTCTCAACTATGCCCCATCATTTCTTGCTTCTCTCTG
TACACACAGCCTACTCTACCTATTGTTGCNTCTTTTGAGCTACTACACAA
TCATCCTTTGATTTTTTTCACTCCTATTATGCTCTGCTTTTCTTGGTATA
AAATGTCCTTCCTTTCCCAACAGCCCCGTGTTCTGATTTGCGTGTCAATA
GAAAAATATCTGACAAAGTATCTTTATGTTTTAGTGAGTACCAACAATTT
ATCCCATTTTGTCCACTACCTATCTCATTGTACGCCGATCATTCGCTTTC
CCGTTATCTCTCCCACCATCACTCTTTGTTTTACGCCCCTATCACCCACT
CATTATTATTCTTGTTTTCCCTTGTATTACTTCCTGATTCACCATCTGTT
CCCCACTATTTTATTCTGTTTTTTGTTTCTGTTATTTCACCTGTTTTTAT
CCTTCTCTGCACGTCCACTTTCTTTTTAAACCGCTTGCCATTATTTTCCC
CGCACCGCATTTTTTCN

NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGTTATATATTGAGTC
TCTACCAAAATCAGCTATATGCTGGATCATAAAGAAAGTCTCAGAAGAAC
AATATCCTTCCCTGGAAAGATGCCTCTATTGTAACTTCTCGAATCCCTGA
CTTGTGATGCTACACGGAAAAGCAGCTGTCCTGAAACGGAGAGGCCATCC
TGGATTATTGTGTGGGTCTTTCCAAGGGAAAAAGGGCTGGGGAGCTGGTG
TCAGTGACTCAGCCAGCACCGGCCATCTCTGACAATGGAGGAGGGCCATG
AGTCAAGCACCCTCTAAATGCTGGAAACGTTAAAAAACAAAGCTAAATGA
AACAAACAAACAAACAAACAAACAAAAACAGACCAGAAACCCTGCTTCTC
CTCAAGGTCTCTGAAACAAGGCAGCCCCACTGCACTCTGGTTTCTTAGCC
CAGTGAGGCTCCTGTGACATAACTAATTTGCGTTGGATGTCTGTGCTAAC
TTATCACAGGAGCACTATGCACCTTATCCATTAACTTAATAATATGAACT
AAGGCAATGTCCCGTTGATTGTCACATAACCCAATATATTTCCCCATTAT
TTTTCACTCTTGGCCTCTCATCATTTTGTTTCAAAACCCCCTTATTTTTT
ATAATGTGCTTGTTACCGTCTAGGTCCTATCCTCAAACCTCTCCTTGTTA
CCTCTACTCCCGTTCTCA

Query= MSMg01no437_m03.b1 MSMg01no437_m03.b1 CHROMAT_FILE:
MSMg01no437_m03.b1 PHD_FILE: MSMg01no437_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:15 2005
         (247 letters)



>mm_chr4_48257976_48258622
          Length = 647

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagggagggggaacagtattttttaaaagcttccaatagtaggaacttcttcagcattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagggagggggaacagtattttttaaaagcttccaatagtaggaacttcttcagcattac 260

                                                                       
Query: 61  ctaaagggtttttaaaactggggtacttatgggaagcacaaaatctttccttagttaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaagggtttttaaaactggggtacttatgggaagcacaaaatctttccttagttaccc 320

                                                                       
Query: 121 tccctatcttcctccaaggcaacctgtctggctagcaaagccagtacttaaaagccacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccctatcttcctccaaggcaacctgtctggctagcaaagccagtacttaaaagccacct 380

                                                                       
Query: 181 atatcctgtctcaactatgccccatcatttcttgcttctctctgtacacacagcctactc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatcctgtctcaactatgccccatcatttcttgcttctctctgtacacacagcctactc 440

                 
Query: 241 taccta 246
           ||||||
Sbjct: 441 taccta 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no437_m03.g1 MSMg01no437_m03.g1 CHROMAT_FILE:
MSMg01no437_m03.g1 PHD_FILE: MSMg01no437_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:15 2005
         (244 letters)



>mm_chr4_48413800_48414443
          Length = 644

 Score =  410 bits (212), Expect = e-119
 Identities = 236/244 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcagttatatattgagtctctaccaaaatcagctatatgctggatcataaagaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttttcagttatatattgagtctctaccaaaatcagctatatgctggatcataaagaaagt 449

                                                                       
Query: 61  ctcagaagaacaatatccttccctggaaagatgcctctattgtaacttctcgaatccctg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 448 ctcagaagaacaatatccttccctggaaagatgtctctattgtaacttctcgaatccctg 389

                                                                       
Query: 121 acttgtgatgctacacggaaaagcagctgtcctgaaacggagaggccatcctggattatt 180
           |||||||| |||||||||||||||||||||||||||| || ||| |||| ||||||||||
Sbjct: 388 acttgtgaagctacacggaaaagcagctgtcctgaaatggggagaccattctggattatt 329

                                                                       
Query: 181 gtgtgggtctttccaagggaaaaagggctggggagctggtgtcagtgactcagccagcac 240
           |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 328 gtgtgggtatttccaagggaaaaagggctggggagccggtgtcagtgactcagccagcac 269

               
Query: 241 cggc 244
           ||||
Sbjct: 268 cggc 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)