BAC Information

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BAC

Clone NameMSMg01-437M16
Chromosome4 (Build37)
Map Location 147,948,752 - 147,949,173
singlet/doubletsinglet
Overlap geneExosc10
Upstream geneOTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, LOC100043151
Downstream geneSrm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437M16.T7 (MSMg01no437_m16.b1)MSMg01-437M16.TJ (MSMg01no437_m16.g1)
ACCAG528540AG528541
length774824
length of high quality
(start - end)		514 (40 - 553)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no437_m16.b1 PHD_FILE: MSMg01no437_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:18 2005CHROMAT_FILE: MSMg01no437_m16.g1 PHD_FILE: MSMg01no437_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCACTCTGTTCACCAGGCTGGCCTCAAACTTAAGAGATCCACTTGTCT
CTGCTTCCCAAGTGCTGGGATTAAAGGCGGGCATCACCACTGCTGGTTGA
TTTTTAAAAGAAATTTTATGTGCATGAGTGTTCTGTTTGTTTGTTTGTAT
GTATGCGCACATGTGTAGCCGGTGCCTGCCTATGGAGGTCAAGAGGTGCT
AGACCCCCTGGAACTGGAGCCATACATCACTGTGAGCTGCCACCAGGGTC
CTGGGAATTAACAAAGTCCTGCAAGAGCAGCACCTGAGAGACAGAAGTCT
GAGGTTAGACTGGGCAGCAGGATGAGGTCCTGACTAAGAAGAAAAAGGAA
GTTCTACGGAGCAGACCAAGCTGCTGCGTGCCCATGACAGCTCTGCCAGC
CAAGACCAACCACCACCCTAAACCCTGTCGAATATACTTTTACTGTGACA
GGCTTTGTCTGTGTAACCCTGTTTGTTCTCGTACTGTGTAGAGTGTAACT
CACTGGCCTCTTACTCAAGAGAACTGTCTGTCCCCACCTCTCGAGTGGTG
GGCATGCACTATCATGCTTGTCTCCATCATGACTTTTAAAAATGTGCATT
TTTTCCTGTGTGTGTTATCTACACCTCTAACTACTACCTTTTGATGTATG
TTTCCTCCCCTGTTCTCCCCCCCCTCCTTTACCCTTTACTACTTCTCTCC
ATTTTCTCTTTCCTTTCCTTGTGT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGATCTTCTGGTCATAGGCATG
TACCGCCTGATTAAGGATGGCATTTTGAAGAAAGACTTCATAAATGGTAT
TTAGACTGTCTCTCCCTCTGTGTGTCTATATGTCTATGTGTGTGTGTGTG
TGTGTCTGTCTGTCTGTCTCTGTCTGTCTGTGTCTCTCTCTGTCTATTTG
TGTCTCTCTGTGTATCTCTCCCTTTCTGTCTCTGTCTCTCTGTCTCTGTG
TGTCTTGCTCTGTCTGTCTGTTTGTCTCTCTTTGTCTCTGCGTTTCTCTC
TGTGTCTCTCTGATTCTCCTTCCCTTTCTGCCTTTGTCTCTGTCTCTGTC
TGCGTGTGTGTGTCCCCCCCCTTCTTTTTTTTCCTTTTTTTCCGTCTCTT
TTCTCCGTCTCTCTCCCCCTTCCTTTTCTTCCTCTCTTCTCTTTCTTTCC
TTTTCCCTCTTTCCCCTTTTCTTTCTTTCCTTCTTTTTTCCTCTCTCTTT
TCCTCTTTCCTCCCTCTCTCTTCTCCCTTCCTTCCCTCCTTCTCTTTCTT
TTTCCCCTTTTTTTTTTCCTCTTTTCCCCCCTTCTCTCTTTCCTCCTCGT
TCTTTCCGTTCCTTTTTTCTCCTCCCTCCCTTTCGTTTCTTTCCCTTTCC
CTTTTCTTTCTCTCCTTGCTCTCTTTCCCCCCTTTTTCTCTCTCCTCCTT
CTTTTTCCTTTCTCCTTTTTCTCTTTCCCTTTCTCCTTTTTTCTTTTTCT
TTTCTTTCCTTCTCTTCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_m16.b1 MSMg01no437_m16.b1 CHROMAT_FILE:
MSMg01no437_m16.b1 PHD_FILE: MSMg01no437_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:18 2005
         (514 letters)



>mm_chr4_147948260_147949173
          Length = 914

 Score =  803 bits (415), Expect = 0.0
 Identities = 421/423 (99%), Gaps = 2/423 (0%)
 Strand = Plus / Minus

                                                                       
Query: 93  catcaccactgctggttgatttttaaaagaaattttatgtgcatgagtgttctgtttgtt 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 catcaccactgctggttgatttttaaaagaaattttatgtgcatgagtgttctgtttgtt 855

                                                                       
Query: 153 tgtttgtatgtatgcgcacatgtgtagccggtgcctgcctatggaggtcaagaggtgcta 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tgtttgtatgtatgcgcacatgtgtagccggtgcctgcctatggaggtcaagaggtgcta 795

                                                                       
Query: 213 gaccccctggaactggagccatacatcactgtgagctgccaccagggtcctgggaattaa 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gaccccctggaactggagccatacatcactgtgagctgccaccagggtcctgggaattaa 735

                                                                       
Query: 273 caaagtcctgcaagagcagcacctgagagacagaagtctgaggttagactgggcagcagg 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 caaagtcctgcaagagcagcacctgagagacagaagtctgaggttagactgggcagcagg 675

                                                                       
Query: 333 atgaggtcctgactaagaagaaaaaggaagttctacggagcagaccaagctgctgcgtgc 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atgaggtcctgactaagaagaaaaaggaagttctacggagcagaccaagctgctgcgtgc 615

                                                                       
Query: 393 ccatgacagctctgccagccaagaccaaccaccaccctaaaccctgtcgaatatactttt 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ccatgacagctctgccagccaagaccaaccaccaccctaaaccctgtcgaatatactttt 555

                                                                       
Query: 453 actgtgacaggctttgtctgtgtaaccctgtttgttctcgt-actgtgtagagtgtaact 511
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 554 actgtgacaggctttgtctgtgtaaccctgtttgttct-gttactgtgtagagtgtaact 496

              
Query: 512 cac 514
           |||
Sbjct: 495 cac 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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