BAC Information

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BAC

Clone NameMSMg01-437P20
Chromosome4 (Build37)
Map Location 11,941,745 - 12,100,481
singlet/doubletdoublet
Overlap geneTmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik
Upstream gene2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c
Downstream geneLOC545592, OTTMUSG00000004461
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437P20.T7 (MSMg01no437_p20.b1)MSMg01-437P20.TJ (MSMg01no437_p20.g1)
ACCAG528690AG528691
length817792
length of high quality
(start - end)
205 (45 - 249)182 (74 - 255)
definitionCHROMAT_FILE: MSMg01no437_p20.b1 PHD_FILE: MSMg01no437_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:34 2005CHROMAT_FILE: MSMg01no437_p20.g1 PHD_FILE: MSMg01no437_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,100,280 - 12,100,481)(11,941,745 - 11,941,926)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGTGCTTAAGCCTGTAATGTAGCCACCAGGCTATGTGACTACCT
CAATGGTGGTAGAGGTGTGGGTCACAAGGATACATGCACTACCATGGCAT
GCAGGCCCAGAACAAGGAGGGAGCAATTCTTACTCCTACTGGTCTTAAGA
TGAGCTTTTAGGGGGTGGGGTTGGACACATCTGGGTCCCTACCTCCCAAT
TGCAGAACTTATTTGCTCAGCACCATAGCATTTAATGAAATTATACTGCT
AGTAACAGACTCGCCACCTGGAAAGGCGGGAAAGAACCTAGATGAACAGA
ACCAAAGAAGAACCATCCGTGTCGTTTACAAAATCCTGAACTGACTAGTG
GAGTTGTGGAAGCCACTAAGCCTTATAATTTGTTTATACAACGCAACCTG
ACACGCTAGCACATTTCTGGGGTGCGGCCTATGCATTTGACTGTTTGCCT
AGCTGTATCATTCCCCCCAGGCTGTGTTTCCTGTTCAAACCCTTACTTTC
ATTCCCCTAATTTAAGGCCTTTTTGACACGGACACAATCCCTTATTTCCG
CCCTCCAGTTCCCCTTCTCAAAAACAACTTTTTCCTCACGCCTAAATCTA
CGCGATTGCTTTTTTCTTCTTTTTTCCTCTCTACTGACTTTTTTCTCCCT
CCCCCCTTAATATCCCACTTCTCCCTTCCATACTCTTTTCTTACACTACG
ATCCCTTCGTCTCCTTCCNACTAAATTGCCTATTTCTATCTCTCATTTCT
CCCCCTTCTTTTTCCCG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACTGAGTGCTAGCTATGAATGAGTCA
CATAAATTCTGAAAGAACTGGTTCATTCTTTTATTGATCAATAATTTTGG
CTCTTGTCCTCAGGTACTCTGGTGTTGTAGATCATACTCTGTATAGTCCT
GAACAGTTGGAGGCAAACAGGTTCCACTGTGGTATCTGCAGTGGGCATTT
CATCATAATGGCTCAAGATGAAAATGTAAACTCTGCTGGCTGAATTCTGG
CAGAAGGCCTTTGGATGAAGCAAGATGTCTTGGTACACATCATCATCCCA
GGACTTGGGTGATGGAGGTAAAAGGATTTCAAGTTTGAAGCTGGCCTGGT
CTACATAGCAAGAGTCTGTCTCAAGAAATCAAAATCAACCAGCCAAGCAT
GTTTTATATGCCCCAAAAGGGAAAACATCTACCAAGGTTCTGTCTTTCTT
TTCCCTCTCACTTACCCCCTCGATGTGTGAGAGTGAGAGTGAAGACCGAA
CCTTTATAAATATTTGCCTGGGCATTCCCCCCAACTCCAAAATTATACCC
TAATATTTCTTCAAAATCCCTTCCTTTGAGGCCTTTTTACAAAAATGATT
GGCCTTATAATATTGTTTCCTTTTCTTCTCGACTTGTTCATTCTTTACTC
CTTTTTTTCTTGTTTTGGGGTTAGTGGAAACCCTTCTCCCTTCTTTTCTT
TTGGCTCCCATTTTTATACATCTCTTCTCTTTCTTCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_p20.b1 MSMg01no437_p20.b1 CHROMAT_FILE:
MSMg01no437_p20.b1 PHD_FILE: MSMg01no437_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:34 2005
         (205 letters)



>mm_chr4_12100077_12100681
          Length = 605

 Score =  383 bits (198), Expect = e-111
 Identities = 201/202 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaggtgcttaagcctgtaatgtagccaccaggctatgtgactacctcaatggt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggaattccaggtgcttaagcctgtaatgtagccaccaggctatgtgactacctcaatggt 346

                                                                       
Query: 64  ggtagaggtgtgggtcacaaggatacatgcactaccatggcatgcaggcccagaacaagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggtagaggtgtgggtcacaaggatacatgcactaccatggcatgcaggcccagaacaagg 286

                                                                       
Query: 124 agggagcaattcttactcctactggtcttaagatgagcttttagggggtggggttggaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agggagcaattcttactcctactggtcttaagatgagcttttagggggtggggttggaca 226

                                 
Query: 184 catctgggtccctacctcccaa 205
           ||||||| ||||||||||||||
Sbjct: 225 catctggctccctacctcccaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no437_p20.g1 MSMg01no437_p20.g1 CHROMAT_FILE:
MSMg01no437_p20.g1 PHD_FILE: MSMg01no437_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:35 2005
         (182 letters)



>mm_chr4_11941545_11942126
          Length = 582

 Score =  352 bits (182), Expect = e-102
 Identities = 182/182 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgagtgctagctatgaatgagtcacataaattctgaaagaactggttcattctttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactgagtgctagctatgaatgagtcacataaattctgaaagaactggttcattctttta 260

                                                                       
Query: 61  ttgatcaataattttggctcttgtcctcaggtactctggtgttgtagatcatactctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatcaataattttggctcttgtcctcaggtactctggtgttgtagatcatactctgta 320

                                                                       
Query: 121 tagtcctgaacagttggaggcaaacaggttccactgtggtatctgcagtgggcatttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcctgaacagttggaggcaaacaggttccactgtggtatctgcagtgggcatttcat 380

             
Query: 181 ca 182
           ||
Sbjct: 381 ca 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)