Query= MSMg01no438_i15.b1 MSMg01no438_i15.b1 CHROMAT_FILE:
MSMg01no438_i15.b1 PHD_FILE: MSMg01no438_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:21 2005
(599 letters)
>mm_chr4_97395463_97396461
Length = 999
Score = 1102 bits (570), Expect = 0.0
Identities = 591/598 (98%), Gaps = 2/598 (0%)
Strand = Plus / Plus
Query: 3 gaattcattgtnc-tttccctttgtaatataagattctaaaatgtatacatggtcttggg 61
||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcattgt-cttttagctttgtaatataagattctaaaatgtatacatggtcttggg 261
Query: 62 gatgtaaggatataactcagggcaggttactgtttatcaaaaattacccagtgcttgaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatgtaaggatataactcagggcaggttactgtttatcaaaaattacccagtgcttgaga 321
Query: 122 gagacttcactagggggaagctgtctgagggttgtactgctgtaaacatacaccatgacc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gagacttcactagggggaagctgtctgagggttgtactgctgtaaacatacaccatgacc 381
Query: 182 aaggaaacttataaggacaatacttttgaggctgtcttacaggttccgaggttcagtcca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaggaaacttataaggacaatacttttgaggctgtcttacaggttccgaggttcagtcca 441
Query: 242 taatcatcaaggcaggagcaaggcggcaggcatggtgtatgcaagtctgaaagttctaca 301
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 442 taatcatcaaggcaggagcaaggcggcaggcatggtgcaggcaagtctgaaagttctaca 501
Query: 302 tcttcatctgaaggatactagcagaatacaggcagctaggatgagggtcttaaagcgcca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcttcatctgaaggatactagcagaatacaggcagctaggatgagggtcttaaagcgcca 561
Query: 362 ataaggccataccctctaatagtgtcactccctaggctgagcatatataaccaccgcaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ataaggccataccctctaatagtgtcactccctaggctgagcatatataaccaccgcaga 621
Query: 422 tacctcacaaacttgataatgtgactttgattctcagaacctacatgaaaaaattgaatg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tacctcacaaacttgataatgtgactttgattctcagaacctacatgaaaaaattgaatg 681
Query: 482 cggtggtacccatcaataatccaagcactcctactaccatatgggggaaagaggtagaaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cggtggtacccatcaataatccaagcactcctactaccatatgggggaaagaggtagaaa 741
Query: 542 caagatatgcctgaaaggtcttgggctagctaacgtgctgtgctagcttggagtattc 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 742 caagatatgcctgaaaggtcttgggctagctaacgtgctgtgctagcatggagtattc 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_i15.g1 MSMg01no438_i15.g1 CHROMAT_FILE:
MSMg01no438_i15.g1 PHD_FILE: MSMg01no438_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:21 2005
(578 letters)
>mm_chr4_97552357_97553333
Length = 977
Score = 1064 bits (550), Expect = 0.0
Identities = 571/578 (98%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 1 cacaactgactaccatggaagccagacgttgctagcataaggcaacgtaagccatgtgtg 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 777 cacaactgactaccatggaagccagacgtcgctagcataaggcaacgtaagccatgtgtg 718
Query: 61 atggcaaaaggaagagaaagcagtaggctaaccgaggaaggatggacagatgagcaggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 atggcaaaaggaagagaaagcagtaggctaaccgaggaaggatggacagatgagcaggca 658
Query: 121 tttcccttcttgttccataaaatatctggggcatcgtgaaggctaagtgggatgtactgg 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttccccttcttgttccataaaatatctggggcatcgtgaaggctaagtgggatgtactgg 598
Query: 181 gcaacccagcagaagagcccagagaaaggaggcatccacactggccacaggcgtttctgt 240
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 597 gcagcccagcagaagagcccagagaaaggaggcatccacactggacacaggcgtttctgt 538
Query: 241 tttatagaatggagtgggtaaattctcttgtggacctctgtgctttgcctctgctctgta 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tttatagcatggagtgggtaaattctcttgtggacctctgtgctttgcctctgctctgta 478
Query: 301 cttcgggcacctaaggtgtcagcacccatgcatttccctttaatagtatcattgataggc 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 477 cttcgggcacctaaggtgtcagcacccatgcatttcccttt-atagtatcattgataggc 419
Query: 361 tcaaaagtttcttgagctctttccaatatagcgtttgcctataatgtcttctccagggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcaaaagtttcttgagctctttccaatatagcgtttgcctataatgtcttctccagggct 359
Query: 421 tgactccttcatttcgacaggacaggttttaacatgtggctcacagagaaaagtgaaacc 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgactccttcatttcgacagggcaggttttaacatgtggctcacagagaaaagtgaaacc 299
Query: 481 acaggcaccagcagaactaagaataaaaaacacattttgaaataaaataaaggttaagct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acaggcaccagcagaactaagaataaaaaacacattttgaaataaaataaaggttaagct 239
Query: 541 ctcataccaacagaccttgcttgatcagcaaaaaatgt 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctcataccaacagaccttgcttgatcagcaaaaaatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 977
Length adjustment: 10
Effective length of query: 568
Effective length of database: 967
Effective search space: 549256
Effective search space used: 549256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
