BAC Information

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BAC

Clone NameMSMg01-438K16
Chromosome4 (Build37)
Map Location 47,706,408 - 47,706,715
singlet/doubletsinglet
Overlap genenone
Upstream geneGabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438K16.T7 (MSMg01no438_k16.b1)MSMg01-438K16.TJ (MSMg01no438_k16.g1)
ACCAG529207AG529208
length7601,046
length of high quality
(start - end)		588 (69 - 656)---
definitionCHROMAT_FILE: MSMg01no438_k16.b1 PHD_FILE: MSMg01no438_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:32 2005CHROMAT_FILE: MSMg01no438_k16.g1 PHD_FILE: MSMg01no438_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCATTAAAAATTTCCAGAATTTGAAGATTTTAATTTTATTTGTGTAATTT
TAACTTTGTGTAGCAATTTACTTTGGGTAATATGTTCCAAGATACACACA
TATATGAATATTTACAGCAGTATTGTTTGTATATATGACAGAAGCCCTGG
AAATAATATATTTGGCCATGGGTACTATACTAGTTGAGTAAATCACATTT
CCTTACAATGAAACCCATACAATCTTTAAAAATAATGTCATGGGAAAAAT
TTATTTTCATGAGAAGTCATTCACAATCATGTTGTTGAGTGGAAAAAGAT
CACAAAGCGATATATACATTATGATATCATTTTTGCTTACTACTTCTCCA
CACACGGAAAGAGACAGAGGCTGGAACGGCTACAAGCAAATGTTATCTGT
GGTTTATCTTGGGGAGACAGATTTAAAAGTATTTCAATTTTCTTTTGTTA
TATGTATTTTCCAATTTTTCTACAATGGAAAGAAATCACATTTATAATAA
TTTAAAAAGTTATAAATCAGAACTGTGCCGCCTGGAGTTTAGCACAAACA
TGGAGCTCCAACTGGGGCTCTGCCATTGCCAAGGAAAGCGGAGGAACCAA
CTGCTTGGCTTCACACATGGTGCCGGGGCGGCCTCAGTCAAGGGCAGCAT
CGGGTGTGAGTGTGACCACTGAAACCAGGGTCCAGTAGCTCTTATGTCAC
GCACGTCCAC

GAAGGGTTGTGTTTAGAGGCGATAGGCGGGCACGACACACAATTAGAAAG
AATAATGCAAATTATATTCATGTATTATGTTCTGGTGGTCGTCTCTGTGG
TCGTGGTTAGTCTGTGTTGTGTGTGCTGCCATTTTCTTGAGTATTATTGT
GGCAAGACAGGAGAACGACCAGAGGGAGAGTGGAGTGATGGGAGGTGTAG
AACGTGGGAGTAGTGAATATACGAAATAAATGATGGATAGTAGATGTTTT
ATGTTCGTGTTGTGTCGTGCGTGTGTTGCGGCCGGGTGCGTCATGTCTCG
TTTTCTATGGATCGGAGTGTGGAGTGCCGTAATAATGACTAGTTTCGGAA
GTACAGAGGCTTAGAATCATAATAATTCAATATTTCTTTTTCATACATAG
CTTTCTATCTACGCTGCCGGATGGAAGGGCGTTGCGAGGGAGTGATGTTT
ATCCAGTTTTTGTGCGCGTATGTGTGTGTTCTTCGGCAGCAGAGAGGCAC
TAATGTTAATTGATTAAGAGAAATAATAACGACAAGATAAAGTTTGTTTC
ATGAACTTTATCATATATGTTACGGAGAGGCGAGGATCGTTAGTGAGAAG
CAGAGGAGTGCGATAATAGTTCATGAGGAGATGGAGCGTGGACTGAGTTG
TGTGGTACGATGGATCTATATAACCATCTTATATATTCGTACTCTAGGCG
GGGTATTGTGTATACATTAATTCGAAGGATGTTAGATAAGCGCAGTACTG
CATGATGGTGACGAGGTGAGGTCTGATGAGATTGTGGTATGAGGTTTTAT
GGCTNCGGGTGTTTATATGTGTCTGTGGTGGGAGTGGGGTGATGGCGAGA
GATCTTTATTCTACAATTATACTTGGATTCTATTTGACATAGGCGAAAGA
GAGGCCGAATAGAATAGAGAACATCAACATGTTCAGAATATCAATAAGCC
GATGTATGGATGTATATGAGTGTGCTGAGTGGTNGGCCCTGTTATTGTGG
TTGAAGACGGTGCTGATCTGCACGTTATGGTTACGTTGACTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_k16.b1 MSMg01no438_k16.b1 CHROMAT_FILE:
MSMg01no438_k16.b1 PHD_FILE: MSMg01no438_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:32 2005
         (588 letters)



>mm_chr4_47705728_47706715
          Length = 988

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 281 atcacaaagcgatatatacattatgatatcatttttgcttactacttctccacacacgga 340
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 atcacgaagcgatatatacattatgatatcatttttgcttactacttctccacacacgga 929

                                                                       
Query: 341 aagagacagaggctggaacggctacaagcaaatgttatctgtggtttatcttggggagac 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 aagagacagaggctggaacggctacaagcaaatgttatctgtggtttatcttggggagac 869

                                                                       
Query: 401 agatttaaaagtatttcaattttcttttgttatatgtattttccaatttttctacaatgg 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 agatttaaaagtatttcaattttcttttgttatatgtattttccaatttttctacaatgg 809

                                                                       
Query: 461 aaagaaatcacatttataataatttaaaaagttataaatcagaactgtgccgcctggagt 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aaagaaatcacatttataataatttaaaaagttataaatcagaactgtgccgcctggagt 749

                                                                       
Query: 521 ttagcacaaacatggagctccaactggggctctgccattgccaaggaaagcggaggaacc 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttagcacaaacatggagctccaactggggctctgccattgccaaggaaagcggaggaacc 689

                   
Query: 581 aactgctt 588
           ||||||||
Sbjct: 688 aactgctt 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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