AAATGGGTTAATCATTCAGATCCGGATTCTTATGATCTGGACAGATTTCA
GCTGGATGGCATGAGACCAGGTTGGTCAACCCCTCCCCTTAGTCCTCATC
ACGAAAATGAGCGCCACTCAGCATAGTTGATGGGATATGTCTGTAAGATT
CTCTGGGGGGGCCCGCCCCGCCCGCCCATCTCTCTCTGTCTCTGTCTGAA
AAGCGCCTCTTCATACAGAAAAGGGGGGAAATATATGGGGGTGGTGTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTTGTGGACTAATTCTCCTCCCCCT
CTCTGAGGACCATCTGTCTCAGGGGCACAAGAAGAAATGGGCATCTGTTC
AGATCTGTGGGGTTGGTGCCTGGACCTGTTCCTATAATCCTTCCAAGCAG
AGGACTGAGACATCTTTGGAGCAACCCCCAAATTTTAAAGTACTGTGGCC
TTCAGGTAGGAATTGTAGAATGAATACAAAATAATTTGTGTGTGAGTGGG
CTAAGACTGTGGATCAGGGTGAAGCACTTGCTATGCAAATATGAGGAACT
ACATTTAGAGTGCCATGGTGGTGTATACCTGTAATCCCAGGTGTAGTGCC
AAAGTGGGGTGGGATGATCATTGTGACTTTCTGGTCAGCCACAATAATTA
AATCAGAGAGATTCAGATACAGTGAGAAGTTTTGTCTGATAAATAGGACT
CCAGACATCAGCCTTACATGTATGCACATGAAACCACTCCATACCCAACA
TACACATGAACATTTTTACGTTCATACACTACACATACAGACACACATTA
TTTTTTAAGAACCTGGTTTTATATAACAGATTATGTGATCTACCATTCTA
TAGCCCAAGATTAAAGTTTCTTTTATTCAGAACTATGATTTTAGACTTTG
GGTCATACTACTTTGGGTATCACTTCCATCCCTGTTTTTCTCCGTATTAA
ATTTTCTGG

Query= MSMg01no438_k21.g1 MSMg01no438_k21.g1 CHROMAT_FILE:
MSMg01no438_k21.g1 PHD_FILE: MSMg01no438_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:33 2005
         (507 letters)



>mm_chr4_90901344_90902249
          Length = 906

 Score =  859 bits (444), Expect = 0.0
 Identities = 480/492 (97%), Gaps = 3/492 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcttgtggactaattctcctccccctctctgaggaccatctgtctcaggggcacaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tctcttgtggactaattctcctccccctctctgaggaccatctgtctcaggggcacaaga 431

                                                                       
Query: 61  agaaatgggcatctgttcagatctgtggggttggtgcctggacctgttcctataatcctt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 430 agaaatgggcatctgttcagatctgtgcggttggtgcctggacctgttcctataatcctt 371

                                                                       
Query: 121 ccaagcagaggactgagacatctttggagcaacccccaaattttaaagtactgtggcctt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cc-agcagaggactgagacatctttggagcaacccccaaattttaaagtactgtggcctt 312

                                                                       
Query: 181 caggtaggaattgtagaatgaatacaaaataatttgtgtgtgagtgggctaagactgtgg 240
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 311 caggtaggaattgtagaatgaatacaaaataatttgggtgcgagtgggctaagactgtgg 252

                                                                       
Query: 241 atcagggtgaagcacttgctatgcaaatatgaggaactacatttagagtgccatggtggt 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 251 atcagggtgaagcacttgctatgcaaatatgaggaactccatttagagtgccatggtggt 192

                                                                       
Query: 301 gtatacctgtaatcccaggtgtagtgccaaagtggggtgggatgatcattgtgactttct 360
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 191 gtatacctgtaatcccaggggtagtgacaaagtggggtgggatgatcattgtgactttct 132

                                                                       
Query: 361 ggtcagccacaataattaaatcagagagattcagatacagtgagaagttttgtct-gata 419
           || ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct: 131 ggccagccacaataattaaatcagagagattcagatccagtgagaagttttgtctgga-a 73

                                                                       
Query: 420 aataggactccagacatcagccttacatgtatgcacatgaaaccactccatacccaacat 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 72  aataggactccagacatcagccttacatgtatgcacatgaaaccactccatacccaacgt 13

                       
Query: 480 acacatgaacat 491
           ||||||||||||
Sbjct: 12  acacatgaacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space:   445312
Effective search space used:   445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)