Query= MSMg01no438_l02.b1 MSMg01no438_l02.b1 CHROMAT_FILE:
MSMg01no438_l02.b1 PHD_FILE: MSMg01no438_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:34 2005
(280 letters)
>mm_chr4_91657683_91658362
Length = 680
Score = 443 bits (229), Expect = e-129
Identities = 273/307 (88%), Gaps = 30/307 (9%)
Strand = Plus / Plus
Query: 4 gaattcacagttatgtatccccacacagagctacatttatttattttttaaaattaattt 63
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcacagttatgtattgccacacagagctacatttatttattttttaaaattaattt 263
Query: 64 caatactattcttctgtctattcttgctcaattatatgtgtcttgtttattgttttttaa 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 caatactattcttctgtctattcttgctcaattatatttgtcttgtttattgttttttaa 323
Query: 124 aagccataaattcaaaatgaattagcagccctttttgttcttaaacacacacacacacac 183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 aagccataaattcaaaatgaattatcagccctttttgttcttaaacacacacacacacac 383
Query: 184 acacaca------------------------------aactaacactactaaaatcaaaa 213
||||||| |||||||||||||||||||||||
Sbjct: 384 acacacacacacacacacacacacacacacacacacaaactaacactactaaaatcaaaa 443
Query: 214 taacaggaattaacgattgttggtcactaataactctcaatatcaatggattcaagcccc 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taacaggaattaacgattgttggtcactaataactctcaatatcaatggattcaagcccc 503
Query: 274 aaataaa 280
|||||||
Sbjct: 504 aaataaa 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no438_l02.g1 MSMg01no438_l02.g1 CHROMAT_FILE:
MSMg01no438_l02.g1 PHD_FILE: MSMg01no438_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:34 2005
(186 letters)
>mm_chr4_91834738_91835323
Length = 586
Score = 329 bits (170), Expect = 7e-95
Identities = 182/186 (97%)
Strand = Plus / Minus
Query: 1 acagctaaaaataatcttatttgtgttccatggacatatatccctttgttcagaaaagtt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 386 acagctaaaaataatcttatttgtgttccatggacacatatccctttgttcagaaaagtt 327
Query: 61 agcattctgtgcattattagtgctaagtaaatatttcatgaggcagtggatgaggaagaa 120
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agcattctgtgcactattagggctaagtaaatatttcatgaggcagtggatgaggaagaa 267
Query: 121 agtggtgtaaattaaatgccataatgttctctactatacgaaaactaggctaaatttgct 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agcggtgtaaattaaatgccataatgttctctactatacgaaaactaggctaaatttgct 207
Query: 181 tagttt 186
||||||
Sbjct: 206 tagttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space: 102884
Effective search space used: 102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
