BAC Information

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BAC

Clone NameMSMg01-438N15
Chromosome4 (Build37)
Map Location 81,280,641 - 81,281,021
singlet/doubletsinglet
Overlap genenone
Upstream geneTyrp1, D4Bwg0951e, Mpdz, LOC100040131
Downstream geneLOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438N15.T7 (MSMg01no438_n15.b1)MSMg01-438N15.TJ (MSMg01no438_n15.g1)
ACCAG529347AG529348
length773850
length of high quality
(start - end)		387 (44 - 430)135 (75 - 209)
definitionCHROMAT_FILE: MSMg01no438_n15.b1 PHD_FILE: MSMg01no438_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:46 2005CHROMAT_FILE: MSMg01no438_n15.g1 PHD_FILE: MSMg01no438_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCACTTTACCCCCAAAAGCCCCCTTTTGCTTGGAGTGTGCATATAAT
TTAGTGACTTGCTTTAAAGGCACATCATTTGGAAAGAGGAAAAATAACAT
TACAGTAGAGGAAGACACTGCCTTGACTGAGTGATTGTGCATGTCCTGAG
TCAGGTTACTATTTGGCATGCGTGTCAATGAAGAATGGTGGAATAATTCG
AATACAGACTCGAGAGACCACCGAGGATTTAAAGAACAGAAATACAGCAA
TGTTGACCTTTCCTTCCTTCATAGATACTACAGTGCTATAAGATGTTAAT
GATGGAAGAAACTAGGAAAGGACAATATAGGAACCATCTAGACTACTCTT
GTGGGATTTGGGTTCTTGTTTGGTTGGTTTTGNNGTATTTTNNNNNTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTNTTTT
TTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTN
NTTTTTTTTTTTNTTTNNTTTNTNTTTTTTTTNTTTTTTTTTTTTTTTTT
NTNTTTNTTNTTTTTTNTTTTTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATG
AATGGGTGTTGGATCTTGTCGAATGCTTTTTCCACATCTAACGAGATGAT
CATGTGGTTTTTGTTTTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTTGNNTATNNNNTCTTNTTTGTATTTCTTTTTTATTTATTTGTTTG
TTTTTTTTTTATGTGTGTTTGAATGTGCACTTGGTCTTTGTAAGTGACCT
TTTTCCCTCCCATTCTATGTTTTTTTTTTTTCTCTCACCTTATTCCTTTT
TCCTTCCTTTTTCTCGCTCTTTCTTTCATCTCTTTGGTGTTCCTTTTTTT
CTTTTTATCTTTTTTTTTTCCCCCCCCCCCTACTCTCTTGTCTTCCTTCT
TTCCCCTCTTCTTTCCTACCCCTCTCCTTTTTTTTCTCCTCTTTTCTTTT
TTTCCTTTTTTTTCATTTCTTCTTTACCCTTCCCCCATTTTTTCCTCTTT
ATTCTTTTTTCTTGTTTTTCTTTTCTCCTTCCTTCTTTTCCCCCCTTTTC
TTTTTTTTTTCTATCCCCTTCTTTCTTCTCCCTTTTTTTTTTTCTTTATA
TATCACGTACCCTACCTTTCTCACTCTTCTTTTATTCCTCTCTTTTTCTT
CTCTCTATTTTCTTATCCCCTTTTTCTTTTATCTCCTTTTCTCTCTCTTT
ATCCCTCTCCATTTCTTCTCTTTCTCTCCTTTTCCTCTCTTCTTTTTCCT
CTCTTCCCGTCTCCTTTCGTTATTTTTTTACTTTCCTTCTCTTTCACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_n15.b1 MSMg01no438_n15.b1 CHROMAT_FILE:
MSMg01no438_n15.b1 PHD_FILE: MSMg01no438_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:46 2005
         (387 letters)



>mm_chr4_81280435_81281221
          Length = 787

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcactttacccccaaaagcccccttttgcttggagtgtgcatataatttagtgact 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcactttacccccaaaagcccccttttgcttggagtgtgcatataatttagtgact 266

                                                                       
Query: 67  tgctttaaaggcacatcatttggaaagaggaaaaataacattacagtagaggaagacact 126
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 267 tgcgttaaaggcacatcatttggaaagaggaaacataacattacagtagaggaagacact 326

                                                                       
Query: 127 gccttgactgagtgattgtgcatgtcctgagtcaggttactatttggcatgcgtgtcaat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 327 gccttgactgagtgattgtgcatgtcctgagtcaggttactatttggcatgggtgtcaat 386

                                                                       
Query: 187 gaagaatggtggaataattcgaatacagactcgagagaccaccgaggatttaaagaacag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaagaatggtggaataattcgaatacagactcgagagaccaccgaggatttaaagaacag 446

                                                                       
Query: 247 aaatacagcaatgttgacctttccttccttcatagatactacagtgctataagatgttaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaatacagcaatgttgacctttccttccttcatagatactacagtgctataagatgttaa 506

                                                                       
Query: 307 tgatggaagaaactaggaaaggacaatataggaaccatctagactactcttgtgggattt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgatggaagaaactaggaaaggacaatataggaaccatctagactactcttgtgggattt 566

                                
Query: 367 gggttcttgtttggttggttt 387
           |||||||||||||||||||||
Sbjct: 567 gggttcttgtttggttggttt 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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