Query= MSMg01no439_a01.b1 MSMg01no439_a01.b1 CHROMAT_FILE:
MSMg01no439_a01.b1 PHD_FILE: MSMg01no439_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:59 2005
(582 letters)
>mm_chr4_11788251_11789232
Length = 982
Score = 814 bits (421), Expect = 0.0
Identities = 433/437 (99%)
Strand = Plus / Minus
Query: 139 agacacaaagccaaaataaattgtaaggcagacacacttgtaacccatgaggccatcaat 198
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 agacacaaagccaaactaaattgtaaggcagacacacttgtaacccatgaggccatcaat 923
Query: 199 ctctctgtgtatgagtacgttatcccattcacgagataagagccatcaggaccagtgacc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ctctctgtgtatgagtacgttatcccattcacgagataagagccatcaggaccagtgacc 863
Query: 259 tcctaaatagcccactgcagacctgtctctaaataccacacaatttcaatatgggttttg 318
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 862 tcctaaatatcccactgcagacctgtctcaaaataccacacaatttcaatatgggttttg 803
Query: 319 ttgggaacattcaaaccagagcagagggtcttccatgtctcagtttattgcttcagtagc 378
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 802 ttgggaacattcaaaccagagcagagagtcttccatgtctcagtttattgcttcagtagc 743
Query: 379 atgcaggagagagaactactaggtcttaacaccactgtctcccatgagcatggcccaagc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atgcaggagagagaactactaggtcttaacaccactgtctcccatgagcatggcccaagc 683
Query: 439 aagcatcctagtatcctagtatttaaaggaggcagtgaaaagcaagcttcccttggagta 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aagcatcctagtatcctagtatttaaaggaggcagtgaaaagcaagcttcccttggagta 623
Query: 499 ccaggaaggagaaaccttcctttcgctctgccccagcttttatggcttctctccagtcca 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ccaggaaggagaaaccttcctttcgctctgccccagcttttatggcttctctccagtcca 563
Query: 559 cattactgtgggaagtc 575
|||||||||||||||||
Sbjct: 562 cattactgtgggaagtc 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_a01.g1 MSMg01no439_a01.g1 CHROMAT_FILE:
MSMg01no439_a01.g1 PHD_FILE: MSMg01no439_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:59 2005
(203 letters)
>mm_chr4_11613825_11614426
Length = 602
Score = 368 bits (190), Expect = e-106
Identities = 199/202 (98%), Gaps = 1/202 (0%)
Strand = Plus / Plus
Query: 1 catgagaccagcatcatgtcttctgagggtgatgccctaattttggtgccctaatgactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgagaccagcatcatgtcttctgagggtgatgccctaattttggtgccctaatgactt 260
Query: 61 tgaagtaagctccacttcttaaacattctaccattttcagtcctagcacatgaaccagtg 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tgaagtaagctccacttcttaaacattctaccattttcagtcttagcacatgaaccagtg 320
Query: 121 ggggcaggggtctgatacacatatgcaagccacagtaggtggatgatctgagaaggaagg 180
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggg-caggggtctgatacacatttgcaagccacagtaggtggatgatctgagaaggaagg 379
Query: 181 agagggagagggagagggagag 202
||||||||||||||||||||||
Sbjct: 380 agagggagagggagagggagag 401
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 602
Length adjustment: 8
Effective length of query: 195
Effective length of database: 594
Effective search space: 115830
Effective search space used: 115830
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
