Query= MSMg01no439_c08.b1 MSMg01no439_c08.b1 CHROMAT_FILE:
MSMg01no439_c08.b1 PHD_FILE: MSMg01no439_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:11 2005
(429 letters)
>mm_chr4_10102317_10103145
Length = 829
Score = 822 bits (425), Expect = 0.0
Identities = 428/429 (99%)
Strand = Plus / Minus
Query: 1 taaccattagtgatttaaatttagtgcaaagttaaaaaaaaatctaagtatagtctttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 taaccattagtgatttaaatttagtgcaaagttaaaaaaaaatctaagtatagtctttgt 570
Query: 61 tttcctctatatttcctaaagaaaaggtagagtgaatcacatgtaaataacatgggtaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttcctctatatttcctaaagaaaaggtagagtgaatcacatgtaaataacatgggtaac 510
Query: 121 tttaaatggaataaataaataaaaactttaaatagaatatcatgggttattgttgcaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tttaaatggaataaataaataaaaactttaaatagaatatcatgggttattgttgcaaga 450
Query: 181 gctctgaaataacacagatcatctctaaattaattgacatagaatgagcgtgagaagttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gctctgaaataacacagatcatctctaaattaattgacatagaatgagcgtgagaagttc 390
Query: 241 cttcctggatgtttgggacactttttgttcttcacacaagccttttttgtctccctcctt 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 389 cttcctggatgtttgggacactttttgttcctcacacaagccttttttgtctccctcctt 330
Query: 301 tttttcccatcaacacagcaaaataatagcaggcaaaagacactgtgtttctgccctaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tttttcccatcaacacagcaaaataatagcaggcaaaagacactgtgtttctgccctaaa 270
Query: 361 tgtcttatgttcaaaatattcaaaagtaaaatcggatcagaaaagagctcaagttttgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtcttatgttcaaaatattcaaaagtaaaatcggatcagaaaagagctcaagttttgga 210
Query: 421 aggtgaaga 429
|||||||||
Sbjct: 209 aggtgaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_c08.g1 MSMg01no439_c08.g1 CHROMAT_FILE:
MSMg01no439_c08.g1 PHD_FILE: MSMg01no439_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:11 2005
(244 letters)
>mm_chr4_9910606_9911249
Length = 644
Score = 455 bits (235), Expect = e-132
Identities = 241/243 (99%)
Strand = Plus / Plus
Query: 1 tttgttgcttcatgtcttccaacacttagcagtggttttgatggtcgctatgttgtgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttgcttcatgtcttccaacacttagcagtggttttgatggtcgctatgttgtgagg 260
Query: 61 agagcctgggacaagtgtatgctaacaacctaagctccctctggacaggcacctcagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagcctgggacaagtgtatgctaacaacctaagctccctctggacaggcacctcagagg 320
Query: 121 aaggatttctgtggcttctgatgtagatagtgcccaggttgagaaagcctgctctattat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aaggatttctgtggcttctgatgtagatagtgcccaggttgagaaagcctgctctaatag 380
Query: 181 atagtgagataatgaatcaaagactgtgtatttctgactgacctttatagacctacctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtgagataatgaatcaaagactgtgtatttctgactgacctttatagacctacctat 440
Query: 241 ttg 243
|||
Sbjct: 441 ttg 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
