BAC Information

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BAC

Clone NameMSMg01-439E09
Chromosome4 (Build37)
Map Location 72,836,888 - 72,837,125
singlet/doubletsinglet
Overlap genenone
Upstream geneTle1, Aldoa-ps2, EG384113, LOC667713, LOC100039698
Downstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439E09.T7 (MSMg01no439_e09.b1)MSMg01-439E09.TJ (MSMg01no439_e09.g1)
ACCAG529667AG529668
length738750
length of high quality
(start - end)
496 (47 - 542)238 (71 - 308)
definitionCHROMAT_FILE: MSMg01no439_e09.b1 PHD_FILE: MSMg01no439_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:21 2005CHROMAT_FILE: MSMg01no439_e09.g1 PHD_FILE: MSMg01no439_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGC
GGAATTCTTTGTTATCTCTTTGATAATTACATACATGTATTTGATCATAT
TTACCACAATCCCTTCCATTAATTTATCCCAGCATTCCCCATCTTTCTAA
TTTTGTAACTTTGTTAAAAATTACAACTTTTGTTTTAATGTAATAATCCA
TTGACCACAAACTATGCTTTCCATATTCATGTGGATAATTTCACTGGAGA
CTAGCTGACCACATCCTTAGAGAAAATTGAATCTTTCTTCTAGAATCCAT
AAACTGTCAACAGCTCTTCTTTTAGCATTGGGGCTCACGAACTCATCACA
CTCATGTTAACATGTTGACTGGCTTGATCTGGTACAGGTAAACGCAGTTG
CTGTGAATACATGATCATGAGTTCAATAGTCATGTCCTGCGATTAGTCCT
GCCGTGTTCTAAAGACACTATGTCACTTCAGTTATCCCCAAACTTTGGCC
CTTTCACTCTTTCCGTTTCTCGTCAATGATAGTTCCTAAACCTTANCAGG
AGGAGTTTGAAATACATGTCCCATTTGTACTGATCCATAGTCAATTTTCT
TTGTATTCACCTAATAAAAAATTCCTAACTTTCCCAAAACTCCTAGAATA
AAAAACCCTCAAATGTTTATCCTACATCCAACCTAAAGGATGCTTATATA
TTACCTTTATTCAATGAACAACCAAATTGTTGTTTGTT
CATGCAGTGNTAGGCCTGGNGGCCGCCTGTTTCTTATTTTTAGGTGAACT
ATAGAAGTACAACAAAAATCATCAGATAAGTTATTTTGCTTAATTGGGCA
GCTAACTTATAGGACTTTTCTTACTGAAAACTCATAAAAGCCACCAGCAA
ACATCTCAAGAAGTCCTTGGTTAGACCATTCCCATTGTGTTACTGTTTTG
TATGAATTCTTACTTATAACTTTATTGTGGATAGCCATGGTTTTTTTTGT
GTTTTGATGCTAATTCTGCTTCCCTAGGAGGGGCTGCCTGGGATATGGGG
TGCATCATGNATTCGTGTGCCTTCTTATGAACCTTTCCCTAATGAATTAT
TATTTCTCCCACCCAATCCCTGACGAGTGGGCAGAACTTCCAGATCAGAG
AAAGGGAGAGCATAATAGTAGAGGAGATGAGGTTTTTTGCCTCATTACAA
TAAACACGACTGTACCACCCTTGTTTTTTATCTGACTCCTTCTGTTCACG
TGTCATATTTGTCCGTGTATCTCTTCCCCGCCCCTTTTTATTTTCCCCTT
GTCTCATTCCCTCTTTTTTTTTTTCTAGTCTACCCTTTTCACGACTCCCC
CCTCTATATTCCTCCTCTCTCTTTTTCTTTACCCCTTCCCCCCAACATTT
TTTTTTTTTTTTCCTTATACCTCACACCCCACGTTATCCTTTTTATTCTC
CCTTTTTTCCTTACTTATACTTCTTTCTCTTTTTCGCCCCCTTCTTACTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_e09.g1 MSMg01no439_e09.g1 CHROMAT_FILE:
MSMg01no439_e09.g1 PHD_FILE: MSMg01no439_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:21 2005
         (238 letters)



>mm_chr4_72836688_72837325
          Length = 638

 Score =  422 bits (218), Expect = e-122
 Identities = 233/238 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagataagttattttgcttaattgggcagctaacttataggacttttcttactgaaaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcagataagttaatttgcttaattgggcagctaacttataggacttttcttactgaaaa 260

                                                                       
Query: 61  ctcataaaagccaccagcaaacatctcaagaagtccttggttagaccattcccattgtgt 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ctcataaaagccaccagcaaacatctcaagaagtccttagttagaccattcccattgtgt 320

                                                                       
Query: 121 tactgttttgtatgaattcttacttataactttattgtggatagccatggttttttttgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||
Sbjct: 321 tactgttttgtatgaattcttacttataactttattgtggatagccatggtgctgtttgt 380

                                                                     
Query: 181 gttttgatgctaattctgcttccctaggaggggctgcctgggatatggggtgcatcat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttgatgctaattctgcttccctaggaggggctgcctgggatatggggtgcatcat 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)