Query= MSMg01no439_i01.b1 MSMg01no439_i01.b1 CHROMAT_FILE:
MSMg01no439_i01.b1 PHD_FILE: MSMg01no439_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:38 2005
(447 letters)
>mm_chr4_116935234_116936082
Length = 849
Score = 803 bits (415), Expect = 0.0
Identities = 440/449 (97%), Gaps = 3/449 (0%)
Strand = Plus / Plus
Query: 1 ggcagcatggtggaggagtggctggagtcaggcagcctcctgcccctgcttctgtcattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggcagcatggtggaggagtggctggagtcaggcagcctcctgcccctgcttctgtcattt 261
Query: 61 tacccagttcttttgttattattattatattaagggaggagagtgtctcgtgtaactcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tacccagttcttttgttattattattatattaagggaggagagtgtctcgtgtaactcag 321
Query: 121 gctgactttgaacctgaccttcctctctagctaaggacaacctggaacttccattcctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gctgactttgaacctgaccttcctctctagctaaggacaacctggaacttccattcctcc 381
Query: 181 tgctgccacctccggagaactagggccattctaggtgtgcaacagcgtgcttagttatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgctgccacctccggagaactagggccattctaggtgtgcaacagcgtgcttagttatgc 441
Query: 241 tctttgttcctgggcatctaagccaggaccccgagcatgctaggcaggctgtctgtcaac 300
||| || || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctgtgatc-tgtgcatctaagccaggaccccgagcatgctaggcaggctgtctgtcaac 500
Query: 301 tgagctatgccctaagccctcgcaactttccccttaagatcgttcgcccccccccc--at 358
||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| ||
Sbjct: 501 tgagctatgccctaagccctcacaacttcccccttaagctcgttcgccccccccccccat 560
Query: 359 ctgttcatagagcagaacagaggctagcaaacgccttctgtagagacagacatagtttag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgttcatagagcagaacagaggctagcaaacgccttctgtagagacagacatagtttag 620
Query: 419 gctctgtgagccaccaatcttttttgtag 447
|||||||||||||||||||||||||||||
Sbjct: 621 gctctgtgagccaccaatcttttttgtag 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 849
Length adjustment: 10
Effective length of query: 437
Effective length of database: 839
Effective search space: 366643
Effective search space used: 366643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_i01.g1 MSMg01no439_i01.g1 CHROMAT_FILE:
MSMg01no439_i01.g1 PHD_FILE: MSMg01no439_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:39 2005
(429 letters)
>mm_chr4_117111702_117112531
Length = 830
Score = 729 bits (377), Expect = 0.0
Identities = 417/437 (95%), Gaps = 15/437 (3%)
Strand = Plus / Minus
Query: 1 agaaggaatctttggaggagaattgaaccctattattaggtgtgtttaagtggagactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agaaggaatctttggaggagaattgaaccctattattaggtgtgtttaagtggagactaa 571
Query: 61 atggactgagtattaaggctgatgaagggttctctcagccatctgatataaaggaaaggt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atggaccgagtattaaggctgatgaagggttctctcagccatctgatataaaggaaaggt 511
Query: 121 tcctagcacctgaagatacagattcctttgagtccttatggtctttaattctttatagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tcctagcacctgaagatacagattcctttgagtccttatggtctttaattctttatagtg 451
Query: 181 ctggtggaggggtgctgacaaggcccagcagcctgggccaaacaggggaggaggatagaa 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctggtggaggggtgttgacaaggcccagcagcctgggccaaacaggggaggaggatagaa 391
Query: 241 gtttttctttt-------agcctcaaaaactcggcaatgggggcaaacct-gatgttcat 292
| ||| | |||||||||||||||||| ||||||||||||| || ||||||
Sbjct: 390 g---ttc---tcccacaaagcctcaaaaactcggcagtgggggcaaacctgga-gttcat 338
Query: 293 ttctcaaacctcagacctcctctctagggacagagtcccagatctgcctcttaacgacac 352
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttctcaaacctcatacctcctctctagggacagagtcccagatctgcctcttaacgacac 278
Query: 353 tgagtgagtttattaatatgccattctttcaatcaatcaatatttaaggagttcccctgt 412
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taagtgagtttattaatatgccattctttcaatcaatcaatatttaaggagttcccctgt 218
Query: 413 gtcaggcacagccccat 429
|||||||||||||||||
Sbjct: 217 gtcaggcacagccccat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 830
Length adjustment: 9
Effective length of query: 420
Effective length of database: 821
Effective search space: 344820
Effective search space used: 344820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
