BAC Information

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BAC

Clone NameMSMg01-439K10
Chromosome4 (Build37)
Map Location 7,495,896 - 7,496,130
singlet/doubletsinglet
Overlap genenone
Upstream geneTox, LOC100039421, LOC666700
Downstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439K10.T7 (MSMg01no439_k10.b1)MSMg01-439K10.TJ (MSMg01no439_k10.g1)
ACCAG529954AG529955
length738744
length of high quality
(start - end)
294 (326 - 619)237 (76 - 312)
definitionCHROMAT_FILE: MSMg01no439_k10.b1 PHD_FILE: MSMg01no439_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:50 2005CHROMAT_FILE: MSMg01no439_k10.g1 PHD_FILE: MSMg01no439_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAATCCGCNGGA
ATCTATGAGATTCCGNAAACAAGACCTAAGGCCAATACTCCTTAAATTAT
TCCACAAAATAGAAACAGAAAAAACATTGTCAAATTTATATGAAGTCAGA
TTTACCCTGATATCCAAACCACATGATGATTTCTCAAAGAGAATTATATA
CCAATCATCAACTTGATGCAAATGTATTCAATAAAATACTTGAAATCTGA
TATATAAGAACACATCAAAAGGAACATCCACTATGATCAAACAGGCTTCA
TTCCAGAAATGCAGGGATGGTTCTGCACACAAAATTTGTCAACATAATTT
ACCATATAAATAATATAAAAGAAGAAAAACCCAGATGATTATACCATTAG
ATGCTCAAACAACATTTAACAAAACCCAAACCCTTCATGACAAATGCCTT
GGAGAGATCAAGGATACAAGGGACAAACCTAAACATAATAAAGGCAATTC
AAAGTAAGTCTATAGCCAACATCAAATTAAATGGAGAGAAAGTTAAATCA
ATTCCACTAAAACCAGGAGGGACAAGGGTGTCCAGTCTTTCCATATCTAT
TCAATATATTACTCGAAGGTTTAGCTAGAGCAATAAGACAGCTAAATGAT
AGTTTGTGGACTCACATTAGAAAGCAAGAAATTCTTAGTACACCTTAATG
ACCTCCCAAAATTATACTCAGGAGCTCCTTCCCCTGAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTACCAGAAAAATTCATAAATTAATTATAAAATCTCAGTAT
TAACATAGAAACTGTATTATAAATTTATATAATTACCCAAGTGTTCTATT
TTCCCTGAGGGTAGAACTTTTGCTTGAATAGAAAAAGAAAATTCAGTTCA
ACTCCTTAATTTTAATAAGAACACAATTTTTATGTCAGCTCCTCTTTTCT
TTTGACTTTTTGATATAATAATGCTACAAATGAAAGCAGAGAATAAGTTA
TTTATGCGTTTCTTGATCNTATGAGTCGTATAATTATCTTCATTAGTGTC
CTTTGCTGTGTGCACTCTTTTGGAGTCCCAGGAAAAGCTAAACCTTGCTT
CCCCTATATTTTACATTTCTGAGAAATTTATACACCTCCTTCTCTTATAC
ACAGACAACCGTGCTTTTACCTCCCTGCCCTTACAGTCATCCTTCCCTTC
ATTATTGTGTCATTATTTTTCTATGGGATATAGGTACGATCTGACTCTAA
TATGATTATTTTATTCTCTTGCCTTTACAATTTGCCCCTTGCTATCTGTA
CATCCCTGAATTTTCTCCTTCCCGAGTGTTTATGCCCCAGCAACTCTTTT
GCATTAAAATGCCCCCTTCACTATACCCTGTCTGTTCCCTCTCCTTATTT
CTTTACCAATTGCTTTTCACCCTTTTGATATTTGCTTCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_k10.g1 MSMg01no439_k10.g1 CHROMAT_FILE:
MSMg01no439_k10.g1 PHD_FILE: MSMg01no439_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:50 2005
         (237 letters)



>mm_chr4_7495694_7496330
          Length = 637

 Score =  424 bits (219), Expect = e-123
 Identities = 232/237 (97%), Gaps = 2/237 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaattaattataaaatctcagtattaacatagaaactgtattataaatttatataatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taaattaattataaaatctcagtattaacatagaaactgtattataaatttatataatta 262

                                                                       
Query: 61  cccaagtgttctattttccctgagggtagaacttttgcttgaatagaaaaagaaaattca 120
           |||  | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 263 ccc--gagttctattttccctgaggatagaacttttgcttgaatagaaaaagaaaattca 320

                                                                       
Query: 121 gttcaactccttaattttaataagaacacaatttttatgtcagctcctcttttcttttga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gttcaactccttaattttaataagaacacaatttttatgtcagctcctctttacttttga 380

                                                                    
Query: 181 ctttttgatataataatgctacaaatgaaagcagagaataagttatttatgcgtttc 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttttgatataataatgctacaaatgaaagcagagaataagttatttatgcgtttc 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)