NNNNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTAGGAGTGCCATATTTTCTCTATTCTTATTCCTCCCACC
CCACCCCATCTCTTCACACACACACTCTCTCTCTCTCTCTGCCTTTCTAT
CATGCTTCATTGTGGGGGGGAAAAATGTAGGCAGGCACCAGGCCCTGGGT
TCTATCCCCACCACTGCAAAAACAAACAAATCCCAGAATGGAAACAACAC
TGTAATTTTCAAGAAAAAGAATTACATTATGGAAGAGAAAGGATTATGTG
ATGAAAGCCATGGAGGGACACTTTTCTGCCATAGCTTATAAAACTGTCCC
ACAAGCACTGTGAGGCAGTGATTTCACCCTTTAGAATTTAGGGTACAAAT
TTCAAGACCCCTCTGCCCCTTTGTGTCTCTCCTGTCCCCGTCCTCCCTGG
GTTTCTTCTTGTCAGCATCAGTCTTTGAACAGTTGGCTGGGTCCTGGAGA
CAAGAAGATAGGCATTGTGGGTAAGCTTTCTAAGGCGATTACCCGCAGGT
GGTGTAAGGCAGCTGAGCAAAACAGAGAAACAACTAAACATAGAGGTGAG
ATATGAGAAATGTGAGAAGTGTAAAAGTCTCTAGGAAAGGACTGTGGTGC
ACTCCTCTCAGAAAAAAACAGAGAAAGCCGGGTCCATAAAAATTTGCTGG
GGTTCCTGGAAAGGAAAAAGGTCACTCTGGGTTTGTTCAAAGGAAAAAAA
AAACCGCTCGGCCCC

NCCGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAGCCCTGGGAACCGGGA
GGTGGGACCTTATGCAGAGGCGCTCGAGGGCGCCGCCTACTGAATTGCTC
AAATTGTTTTTTTATGAAACCCAGAACACCTTGGTCAAGATTGGCCCCAC
CCAAAATAGGTTTAACCCTCCAACCTCAATCCCCATTTAAAAAGGGCTCC
CAAAGTTTTGTTAAAACCTAATCAATTGAAGAATTTTCCTAACGAAAAGT
TCCCCCTTTTAAAAAAACCCAAACCTTTTTTGTTTAAAAATTTTTTCCCC
CCCCCTGGTTTTTTTTTTAAAAAAAAAAAAATAATTTTTTTTTTGCNCTC
CCCACCNNNNNNNTNTTCCCCCCCCGTTCCCTTTCNNCNCCCCCCNNNNC
CNCNCCNNNNCCNCCCCCCCCCCCCCCCCNNCCCTCCCCCCNCCCCCCCC
CCNTTNTTTCCTCCTTTCCCCCCCCCCCTTTCCCCCNNTCCCCCCCCNNN
CTCTCCCNCCCCCCCCTCCCCCCCCCCCCCCCNCCCCCCCCCTCCCATTT
TCCCCTTTCTCTTTTTTCNNTTTCCCCNCTCCCCTCCCTTTTCTCACTTT
CNTTTTTTCCCCCCCACCTCTCTTCCCCCCCCCTTTTTTTCCCCTCNNNC
TCCCNNCCCCCTCCTCCCCTCCTTCCCCNTTTTNNNCNCCCCTCTTTTTN
NCCCTCCCCAAAACCTTCCTATTTCACTTTATATTTTGTTTTTTTATG

Query= MSMg01no440_f07.b1 MSMg01no440_f07.b1 CHROMAT_FILE:
MSMg01no440_f07.b1 PHD_FILE: MSMg01no440_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:44 2005
         (507 letters)



>mm_chr4_100201299_100202206
          Length = 908

 Score =  911 bits (471), Expect = 0.0
 Identities = 502/525 (95%), Gaps = 23/525 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttctctattcttattcctcccaccccaccccatctcttcacacacacactctctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 attttctctattcttattcctcccaccccaccccatctcttcacacacacactctctctc 248

                                                                       
Query: 61  tctctctgcctttctatcatgcttcattgtg-----------------ggggggaaaaat 103
           |||||  ||||||||||||||||||||||||                 ||||||||   |
Sbjct: 249 tctct--gcctttctatcatgcttcattgtgtgtgtgtggggggggggggggggaa---t 303

                                                                       
Query: 104 gtaggcaggcaccaggccctgggttctatccccaccactgcaaaaacaaacaaatcccag 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtaggcaggcaccaggccctgggttctatccccaccactgcaaaaacaaacaaatcccag 363

                                                                       
Query: 164 aatggaaacaacactgtaattttcaagaaaaagaattacattatggaagagaaaggatta 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aatggaaacaacactgtaattttcaagaaaaagaattacattatggaagagaaaggatta 423

                                                                       
Query: 224 tgtgatgaaagccatggagggacacttttctgccatagcttataaaactgtcccacaagc 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgtgatgaaagccatggagggacacttttctgccatagcttataaaactgtcccacaagc 483

                                                                       
Query: 284 actgtgaggcagtgatttcaccctttagaatttagggtacaaatttcaagacccctctgc 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 actgtgaggcagtgatttcaccctttagaatttagggtacaaatttcaagacccctctgc 543

                                                                       
Query: 344 ccctttgtgtctctcctgtccccgtcctccctgggtttcttcttgtcagcatcagtcttt 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ccctttgtgtctctcctgtccccgtcctccctgggtttcttcttgtcagcatcagtcttt 603

                                                                       
Query: 404 -gaacagttggctgggtcctggagacaagaagataggcattgtgggtaagctttctaagg 462
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgaacagttggctgggtcctggagacaagaagataggcattgtgggtaagctttctaagg 663

                                                        
Query: 463 cgattacccgcaggtggtgtaaggcagctgagcaaaacagagaaa 507
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cgattacccgcaggtggtgtaaggcagctgagcaaaacagagaaa 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 908
Length adjustment: 10
Effective length of query: 497
Effective length of database: 898
Effective search space:   446306
Effective search space used:   446306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)